Variant report

Variant	rs6953679
Chromosome Location	chr7:147438666-147438667
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10229178	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10230498	0.88[CEU][hapmap]
rs10231699	1.00[JPT][hapmap]
rs10245935	1.00[JPT][hapmap]
rs10253551	1.00[JPT][hapmap]
rs10259955	1.00[JPT][hapmap]
rs10262422	0.94[CEU][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10271321	0.88[CEU][hapmap]
rs10500191	1.00[CEU][hapmap]
rs10500192	0.94[CEU][hapmap];0.97[TSI][hapmap]
rs10952708	1.00[GIH][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10952710	1.00[JPT][hapmap]
rs10952711	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10952713	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1101041	0.97[EUR][1000 genomes]
rs1106439	1.00[CHB][hapmap]
rs11766799	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes]
rs11971275	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12155395	1.00[JPT][hapmap]
rs12539452	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12666318	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12703973	1.00[CHB][hapmap]
rs1357902	0.93[CEU][hapmap];0.95[EUR][1000 genomes]
rs16883690	1.00[JPT][hapmap]
rs17417154	0.94[CEU][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap]
rs17417231	0.94[CEU][hapmap];0.97[TSI][hapmap]
rs17508203	0.94[CEU][hapmap]
rs17508434	0.94[CEU][hapmap]
rs17823834	0.93[CEU][hapmap];0.94[EUR][1000 genomes]
rs2049469	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2140811	0.94[CEU][hapmap];0.82[GIH][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.98[EUR][1000 genomes]
rs2140812	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs2373179	0.94[CEU][hapmap];0.97[EUR][1000 genomes]
rs2373180	0.94[CEU][hapmap]
rs2373182	0.94[CEU][hapmap]
rs2373183	0.87[CEU][hapmap]
rs2888516	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4392814	0.94[CEU][hapmap];0.82[GIH][hapmap];0.82[MEX][hapmap];0.97[TSI][hapmap];0.98[EUR][1000 genomes]
rs4632977	0.94[CEU][hapmap]
rs4726890	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6955939	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6961273	0.97[EUR][1000 genomes]
rs6965796	0.97[EUR][1000 genomes]
rs700319	0.91[GIH][hapmap]
rs700320	0.86[GIH][hapmap]
rs73458209	0.95[ASN][1000 genomes]
rs73458234	0.95[ASN][1000 genomes]
rs73472857	0.95[ASN][1000 genomes]
rs7791979	0.88[CEU][hapmap];0.95[GIH][hapmap];0.97[TSI][hapmap]
rs7809690	0.95[ASN][1000 genomes]
rs851649	0.94[CEU][hapmap]
rs851653	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap];0.97[EUR][1000 genomes]
rs851654	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes]
rs954112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933973	chr7:147438206-147549993	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147437800-147439200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links