Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:147468495..147470634-chr7:147474029..147476158,2	K562	blood:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10085579	0.86[YRI][hapmap]
rs10265547	0.85[YRI][hapmap]
rs10500192	0.80[GIH][hapmap]
rs10952708	0.91[GIH][hapmap]
rs10952711	1.00[YRI][hapmap]
rs11423657	0.81[ASN][1000 genomes]
rs11766799	1.00[YRI][hapmap]
rs12666318	0.90[YRI][hapmap]
rs12703972	0.95[YRI][hapmap]
rs12703973	1.00[YRI][hapmap]
rs13236705	0.95[YRI][hapmap]
rs1525259	0.95[YRI][hapmap]
rs17417154	0.80[GIH][hapmap]
rs17417231	0.80[GIH][hapmap]
rs2373179	0.95[YRI][hapmap]
rs2888516	0.88[GIH][hapmap]
rs6953679	0.91[GIH][hapmap]
rs6955939	0.95[YRI][hapmap]
rs700320	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.93[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7791979	0.95[GIH][hapmap]
rs851649	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs851650	0.81[CHB][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap];0.83[ASN][1000 genomes]
rs851653	0.82[ASW][hapmap];0.95[GIH][hapmap];0.88[LWK][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes]
rs851654	0.95[GIH][hapmap]
rs851674	0.81[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs851679	0.94[JPT][hapmap]
rs851681	0.86[CHD][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933973	chr7:147438206-147549993	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs700319	OR2F1	cis	parietal	SCAN
rs700319	ABCB8	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147461200-147472800	Weak transcription	Brain Angular Gyrus	brain
2	chr7:147468800-147472600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:147468800-147472600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr7:147468800-147473000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:147469600-147470000	Enhancers	Brain Anterior Caudate	brain
6	chr7:147469600-147470000	Enhancers	Brain Cingulate Gyrus	brain
7	chr7:147469800-147470400	Enhancers	Brain Hippocampus Middle	brain
8	chr7:147469800-147471000	Enhancers	Brain Substantia Nigra	brain

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