Variant report

Variant	rs10500192
Chromosome Location	chr7:147444123-147444124
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs1012086	0.81[AFR][1000 genomes]
rs10229178	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs10230498	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs10262422	1.00[CEU][hapmap];1.00[CHB][hapmap];0.99[EUR][1000 genomes]
rs10265558	0.85[MEX][hapmap]
rs10271321	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs10500191	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs10952708	1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs10952711	0.94[CEU][hapmap]
rs1101041	0.97[EUR][1000 genomes]
rs11766799	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs12530955	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12530977	0.89[ASN][1000 genomes]
rs12531094	0.82[JPT][hapmap]
rs12531829	0.89[ASN][1000 genomes]
rs12531831	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12532190	0.89[ASN][1000 genomes]
rs12532660	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12532724	0.89[ASN][1000 genomes]
rs12533614	0.89[ASN][1000 genomes]
rs12534237	1.00[JPT][hapmap]
rs12534449	0.89[ASN][1000 genomes]
rs12535317	0.89[ASN][1000 genomes]
rs12535323	0.89[ASN][1000 genomes]
rs12536417	0.82[JPT][hapmap]
rs12536848	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12538275	0.89[ASN][1000 genomes]
rs12538925	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12539340	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12540410	0.89[ASN][1000 genomes]
rs12540754	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12540757	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12666318	0.94[CEU][hapmap]
rs12703973	0.84[JPT][hapmap]
rs1357902	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs1525252	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1525260	1.00[JPT][hapmap]
rs1525261	1.00[JPT][hapmap]
rs1525262	1.00[JPT][hapmap]
rs1525263	1.00[JPT][hapmap]
rs1525264	0.89[ASN][1000 genomes]
rs1525265	0.89[ASN][1000 genomes]
rs1525266	0.89[ASN][1000 genomes]
rs1525268	1.00[CHB][hapmap]
rs1638048	1.00[JPT][hapmap]
rs17170636	1.00[JPT][hapmap]
rs17170655	0.89[ASN][1000 genomes]
rs17170668	1.00[JPT][hapmap]
rs17226275	1.00[CHB][hapmap]
rs17226520	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs17417154	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs17417231	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs17508203	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17508434	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17823834	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs17824362	1.00[CHB][hapmap];0.80[GIH][hapmap];0.87[LWK][hapmap]
rs17824644	1.00[CHB][hapmap]
rs17824941	1.00[CHB][hapmap];0.83[LWK][hapmap]
rs1990251	1.00[JPT][hapmap]
rs2049469	0.88[CEU][hapmap]
rs2140811	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.97[TSI][hapmap];0.99[EUR][1000 genomes]
rs2373179	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2373180	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2373182	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2373183	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs2888516	0.87[CEU][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs4392814	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes]
rs4632977	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs58710526	0.89[ASN][1000 genomes]
rs6947112	1.00[JPT][hapmap]
rs6953679	0.94[CEU][hapmap];0.97[TSI][hapmap];0.97[EUR][1000 genomes]
rs6955939	0.94[CEU][hapmap]
rs6961273	0.94[EUR][1000 genomes]
rs6965796	0.93[EUR][1000 genomes]
rs700319	0.80[GIH][hapmap]
rs7457261	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7791979	0.94[CEU][hapmap];0.84[GIH][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap]
rs851649	0.88[CEU][hapmap]
rs851653	0.94[CEU][hapmap];0.81[CHD][hapmap];0.84[GIH][hapmap];0.81[MEX][hapmap];0.97[TSI][hapmap];0.97[EUR][1000 genomes]
rs851654	1.00[CEU][hapmap];0.81[CHD][hapmap];0.84[GIH][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap];0.98[EUR][1000 genomes]
rs851683	1.00[JPT][hapmap]
rs851685	0.85[JPT][hapmap]
rs851735	1.00[JPT][hapmap]
rs954112	0.94[CEU][hapmap];0.97[EUR][1000 genomes]
rs954113	1.00[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933973	chr7:147438206-147549993	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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