Variant report

Variant	rs12531831
Chromosome Location	chr7:147475118-147475119
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:147468495..147470634-chr7:147474029..147476158,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10156108	1.00[EUR][1000 genomes]
rs10488352	1.00[YRI][hapmap]
rs10500192	1.00[JPT][hapmap]
rs1074211	1.00[YRI][hapmap]
rs10952713	1.00[EUR][1000 genomes]
rs12530803	0.87[CHD][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs12530825	1.00[YRI][hapmap]
rs12530955	1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12530977	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12531094	0.82[JPT][hapmap]
rs12531773	1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs12531829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12532190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12532478	1.00[YRI][hapmap]
rs12532660	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12532724	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12533614	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12534237	1.00[JPT][hapmap]
rs12534449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12535052	1.00[YRI][hapmap]
rs12535317	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12535323	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12536417	0.82[JPT][hapmap]
rs12536848	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12538275	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12538925	1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12539340	1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12539452	1.00[EUR][1000 genomes]
rs12539579	1.00[CHD][hapmap];1.00[YRI][hapmap]
rs12540410	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12540754	1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12540757	1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12703973	0.84[JPT][hapmap]
rs1525252	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1525260	1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs1525261	1.00[JPT][hapmap]
rs1525262	1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs1525263	1.00[JPT][hapmap]
rs1525264	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1525265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1525266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1638048	1.00[JPT][hapmap]
rs17170636	1.00[JPT][hapmap]
rs17170655	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17170668	1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs17226520	1.00[CHD][hapmap];0.85[JPT][hapmap]
rs17227005	1.00[YRI][hapmap]
rs17234350	1.00[YRI][hapmap]
rs17234406	1.00[YRI][hapmap]
rs17508203	1.00[JPT][hapmap]
rs17825832	1.00[YRI][hapmap]
rs17825924	1.00[YRI][hapmap]
rs1990251	1.00[JPT][hapmap]
rs2373179	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs58710526	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6947112	1.00[JPT][hapmap]
rs7457261	1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851683	1.00[JPT][hapmap]
rs851685	1.00[CHD][hapmap];0.85[JPT][hapmap]
rs851735	1.00[JPT][hapmap]
rs954113	1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933973	chr7:147438206-147549993	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
2	nsv889397	chr7:147471710-147585819	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147473400-147478000	Weak transcription	Brain Substantia Nigra	brain
2	chr7:147473800-147477800	Weak transcription	Brain Hippocampus Middle	brain
3	chr7:147474600-147475200	Enhancers	Brain Cingulate Gyrus	brain

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