Variant report
Variant | rs851685 |
---|---|
Chromosome Location | chr7:147494803-147494804 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10500192 | 0.85[JPT][hapmap] |
rs12530803 | 0.87[CHD][hapmap] |
rs12530955 | 0.82[JPT][hapmap] |
rs12531773 | 1.00[CHD][hapmap] |
rs12531831 | 1.00[CHD][hapmap];0.85[JPT][hapmap] |
rs12532660 | 0.85[JPT][hapmap] |
rs12534237 | 0.85[JPT][hapmap] |
rs12536848 | 0.85[JPT][hapmap] |
rs12538925 | 0.85[JPT][hapmap] |
rs12539340 | 0.85[JPT][hapmap] |
rs12539579 | 1.00[CHD][hapmap] |
rs12540754 | 0.85[JPT][hapmap] |
rs12540757 | 0.85[JPT][hapmap] |
rs12703973 | 0.84[JPT][hapmap] |
rs1525252 | 0.85[JPT][hapmap] |
rs1525260 | 1.00[CHD][hapmap];0.85[JPT][hapmap] |
rs1525261 | 0.85[JPT][hapmap] |
rs1525262 | 1.00[CHD][hapmap];0.85[JPT][hapmap] |
rs1525263 | 0.85[JPT][hapmap] |
rs1638048 | 0.85[JPT][hapmap] |
rs17170636 | 0.85[JPT][hapmap] |
rs17170668 | 1.00[CHD][hapmap];0.85[JPT][hapmap] |
rs17226520 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.97[TSI][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs17508203 | 0.82[JPT][hapmap] |
rs17824362 | 0.97[GIH][hapmap] |
rs17824644 | 0.93[CEU][hapmap];0.92[GIH][hapmap] |
rs17824874 | 0.80[GIH][hapmap] |
rs17824941 | 0.91[GIH][hapmap] |
rs1990251 | 0.85[JPT][hapmap] |
rs2373179 | 0.85[JPT][hapmap] |
rs6947112 | 0.85[JPT][hapmap] |
rs7457261 | 0.85[JPT][hapmap] |
rs851663 | 0.83[GIH][hapmap] |
rs851683 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs851689 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap] |
rs851735 | 0.85[JPT][hapmap] |
rs954113 | 0.85[JPT][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv933973 | chr7:147438206-147549993 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | n/a |
2 | nsv889397 | chr7:147471710-147585819 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:147494600-147506200 | Weak transcription | Brain Substantia Nigra | brain |