Variant report
| Variant | rs17824941 |
|---|---|
| Chromosome Location | chr7:147513111-147513112 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10230498 | 1.00[CHB][hapmap] |
| rs10262422 | 1.00[CHB][hapmap] |
| rs10271321 | 1.00[CHB][hapmap] |
| rs10500191 | 1.00[CHB][hapmap] |
| rs10500192 | 1.00[CHB][hapmap];0.83[LWK][hapmap] |
| rs1525268 | 1.00[CHB][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17226275 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs17226520 | 1.00[CHB][hapmap];0.91[GIH][hapmap] |
| rs17417154 | 1.00[CHB][hapmap];0.83[LWK][hapmap] |
| rs17417231 | 1.00[CHB][hapmap] |
| rs17508203 | 1.00[CHB][hapmap] |
| rs17508434 | 1.00[CHB][hapmap] |
| rs17824362 | 1.00[CHB][hapmap];0.88[GIH][hapmap];0.96[LWK][hapmap];0.86[MEX][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap] |
| rs17824644 | 1.00[CHB][hapmap];0.83[GIH][hapmap];1.00[ASN][1000 genomes] |
| rs2140811 | 1.00[CHB][hapmap] |
| rs2373179 | 1.00[CHB][hapmap] |
| rs2373180 | 1.00[CHB][hapmap] |
| rs2373182 | 1.00[CHB][hapmap] |
| rs2373183 | 1.00[CHB][hapmap] |
| rs4392814 | 1.00[CHB][hapmap] |
| rs4632977 | 1.00[CHB][hapmap] |
| rs7800992 | 1.00[ASN][1000 genomes] |
| rs851685 | 0.91[GIH][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv933973 | chr7:147438206-147549993 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | n/a |
| 2 | nsv889397 | chr7:147471710-147585819 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | n/a |
| 3 | nsv465193 | chr7:147512619-147583680 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | n/a |
| 4 | nsv608965 | chr7:147512619-147583680 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
