Variant report

Variant	rs851652
Chromosome Location	chr7:147458742-147458743
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10085579	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10155998	0.84[JPT][hapmap]
rs10225143	0.85[JPT][hapmap]
rs10231699	0.81[YRI][hapmap]
rs10265547	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10265558	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10274524	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs10280155	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs10952709	0.85[JPT][hapmap];0.90[YRI][hapmap]
rs10952710	1.00[YRI][hapmap]
rs10952711	0.82[JPT][hapmap]
rs10952712	1.00[YRI][hapmap]
rs10952713	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs1106439	0.85[JPT][hapmap]
rs11765619	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs12056208	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12112564	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12113689	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12155395	1.00[YRI][hapmap]
rs12539452	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs12703960	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs12703972	1.00[JPT][hapmap]
rs12703973	0.82[JPT][hapmap]
rs13236705	1.00[JPT][hapmap]
rs1525259	1.00[JPT][hapmap]
rs16883690	0.83[YRI][hapmap]
rs1917617	1.00[CHB][hapmap]
rs2049468	0.94[ASN][1000 genomes]
rs2049469	0.80[YRI][hapmap]
rs34645698	0.94[EUR][1000 genomes]
rs4142924	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4725746	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs58676850	0.94[EUR][1000 genomes]
rs6464838	1.00[CHB][hapmap]
rs6955939	0.85[JPT][hapmap]
rs724440	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs73475064	0.94[EUR][1000 genomes]
rs73475065	0.94[EUR][1000 genomes]
rs7785603	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7791979	0.84[JPT][hapmap]
rs7799600	0.81[YRI][hapmap]
rs7800200	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes]
rs7807589	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs851651	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851653	0.84[JPT][hapmap]
rs851654	0.84[JPT][hapmap]
rs851655	0.96[ASN][1000 genomes]
rs851656	0.96[ASN][1000 genomes]
rs851698	0.81[CEU][hapmap]
rs9640245	0.90[CEU][hapmap]
rs9986848	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933973	chr7:147438206-147549993	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147453800-147460600	Weak transcription	Brain Angular Gyrus	brain
2	chr7:147456800-147458800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr7:147456800-147459200	Weak transcription	Brain Hippocampus Middle	brain
4	chr7:147458600-147459200	Enhancers	Brain Substantia Nigra	brain

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