Variant report
| Variant | rs10952709 |
|---|---|
| Chromosome Location | chr7:147449539-147449540 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:147446008..147448178-chr7:147448478..147451242,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:52)
| rs_ID | r2[population] |
|---|---|
| rs10085579 | 0.88[JPT][hapmap] |
| rs10155998 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10156108 | 1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10231699 | 1.00[CHB][hapmap] |
| rs10245935 | 1.00[CHB][hapmap] |
| rs10253551 | 1.00[CHB][hapmap] |
| rs10259955 | 1.00[CHB][hapmap] |
| rs10265547 | 0.88[JPT][hapmap] |
| rs10265558 | 0.88[JPT][hapmap] |
| rs10952708 | 1.00[CHB][hapmap] |
| rs10952710 | 1.00[CHB][hapmap];0.91[YRI][hapmap] |
| rs10952711 | 1.00[JPT][hapmap] |
| rs10952712 | 0.97[YRI][hapmap] |
| rs10952713 | 1.00[CHB][hapmap];0.91[YRI][hapmap];1.00[EUR][1000 genomes] |
| rs1101041 | 0.95[ASN][1000 genomes] |
| rs1106439 | 1.00[JPT][hapmap] |
| rs11766799 | 1.00[CHB][hapmap];0.95[ASN][1000 genomes] |
| rs11971275 | 1.00[CHB][hapmap] |
| rs12155395 | 1.00[CHB][hapmap];0.90[YRI][hapmap] |
| rs12531829 | 1.00[EUR][1000 genomes] |
| rs12531831 | 1.00[EUR][1000 genomes] |
| rs12532190 | 1.00[EUR][1000 genomes] |
| rs12532660 | 1.00[EUR][1000 genomes] |
| rs12534449 | 1.00[EUR][1000 genomes] |
| rs12536848 | 1.00[EUR][1000 genomes] |
| rs12538275 | 1.00[EUR][1000 genomes] |
| rs12539452 | 1.00[CHB][hapmap];0.91[YRI][hapmap];1.00[EUR][1000 genomes] |
| rs12666318 | 1.00[CHB][hapmap];0.86[JPT][hapmap] |
| rs12703972 | 0.88[JPT][hapmap] |
| rs12703973 | 1.00[JPT][hapmap] |
| rs13236705 | 0.88[JPT][hapmap] |
| rs1525252 | 1.00[EUR][1000 genomes] |
| rs1525259 | 0.88[JPT][hapmap] |
| rs1525265 | 1.00[EUR][1000 genomes] |
| rs1525266 | 1.00[EUR][1000 genomes] |
| rs16883690 | 1.00[CHB][hapmap] |
| rs4142924 | 0.88[JPT][hapmap] |
| rs4725746 | 0.88[JPT][hapmap] |
| rs4726890 | 1.00[CHB][hapmap] |
| rs6955939 | 1.00[JPT][hapmap] |
| rs6961273 | 0.97[ASN][1000 genomes] |
| rs6965796 | 0.97[ASN][1000 genomes] |
| rs724440 | 0.88[JPT][hapmap] |
| rs7457261 | 1.00[EUR][1000 genomes] |
| rs7785603 | 0.88[JPT][hapmap] |
| rs7791979 | 1.00[JPT][hapmap] |
| rs7799600 | 1.00[CHB][hapmap] |
| rs851651 | 0.86[JPT][hapmap] |
| rs851652 | 0.85[JPT][hapmap];0.90[YRI][hapmap] |
| rs851653 | 1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs851654 | 1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs9986848 | 0.88[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv933973 | chr7:147438206-147549993 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
