Variant report

Variant	rs1404731
Chromosome Location	chr7:147505753-147505754
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10274524	0.81[CEU][hapmap];1.00[CHD][hapmap]
rs11765619	0.86[CEU][hapmap]
rs12056208	1.00[CHD][hapmap]
rs12112564	0.83[CHD][hapmap]
rs12703960	1.00[CHD][hapmap]
rs1404733	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7785603	0.81[CEU][hapmap]
rs7805083	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs7807589	0.81[CEU][hapmap]
rs851698	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9640245	0.81[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933973	chr7:147438206-147549993	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
2	nsv889397	chr7:147471710-147585819	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs1404731	ZNF282	cis	parietal	SCAN
rs1404731	CHPF2	cis	parietal	SCAN
rs1404731	KRBA1	cis	parietal	SCAN
rs1404731	ZNF425	cis	parietal	SCAN
rs1404731	TPK1	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147494600-147506200	Weak transcription	Brain Substantia Nigra	brain
2	chr7:147501000-147506200	Weak transcription	Ovary	ovary
3	chr7:147501600-147506400	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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