Variant report

Variant	rs1860136
Chromosome Location	chr7:147333909-147333910
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10155857	1.00[JPT][hapmap]
rs10239776	1.00[CEU][hapmap]
rs10251488	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10259590	1.00[JPT][hapmap]
rs10269290	1.00[JPT][hapmap]
rs10274421	1.00[JPT][hapmap]
rs10276658	1.00[CEU][hapmap]
rs11505677	0.84[CEU][hapmap]
rs13438715	1.00[JPT][hapmap]
rs17170624	1.00[JPT][hapmap]
rs1860135	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28432729	0.98[EUR][1000 genomes]
rs4272288	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6955567	1.00[CEU][hapmap]
rs7788405	1.00[CEU][hapmap]
rs9886094	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147333200-147338400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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