Variant report
| Variant | rs10276097 |
|---|---|
| Chromosome Location | chr7:147339694-147339695 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs10155857 | 1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs10155864 | 1.00[YRI][hapmap] |
| rs10156072 | 1.00[YRI][hapmap] |
| rs10233594 | 1.00[JPT][hapmap] |
| rs10243358 | 1.00[JPT][hapmap] |
| rs10245518 | 0.88[YRI][hapmap] |
| rs10259590 | 1.00[JPT][hapmap] |
| rs10261888 | 1.00[JPT][hapmap] |
| rs10264653 | 1.00[JPT][hapmap] |
| rs10269238 | 1.00[JPT][hapmap] |
| rs10269290 | 1.00[JPT][hapmap] |
| rs10274421 | 1.00[JPT][hapmap] |
| rs10274432 | 1.00[JPT][hapmap] |
| rs10274799 | 1.00[YRI][hapmap] |
| rs10275470 | 1.00[JPT][hapmap] |
| rs13437647 | 1.00[JPT][hapmap] |
| rs13438666 | 0.86[AFR][1000 genomes] |
| rs13438698 | 1.00[JPT][hapmap] |
| rs13438715 | 1.00[JPT][hapmap] |
| rs17170624 | 1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1860135 | 1.00[JPT][hapmap] |
| rs28366557 | 0.86[AFR][1000 genomes] |
| rs28375513 | 0.86[AFR][1000 genomes] |
| rs28391808 | 0.86[AFR][1000 genomes] |
| rs28477379 | 0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28599498 | 0.86[AFR][1000 genomes] |
| rs2888495 | 1.00[JPT][hapmap] |
| rs57004198 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59914873 | 0.83[AMR][1000 genomes] |
| rs60539635 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6975479 | 1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73470987 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73470989 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9886094 | 1.00[JPT][hapmap] |
| rs9886242 | 1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931005 | chr7:146730472-147381257 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv516942 | chr7:147337742-147354931 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 3 | nsv527018 | chr7:147337742-147360817 | Enhancers Active TSS Weak transcription Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
