Variant report

Variant	rs10747049
Chromosome Location	chr9:140008750-140008751
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr9:140008619-140009997	A549	lung:	n/a	chr9:140009232-140009251 chr9:140009186-140009195 chr9:140009235-140009244 chr9:140009200-140009209 chr9:140009237-140009247 chr9:140009238-140009247 chr9:140009188-140009197 chr9:140009185-140009196 chr9:140009235-140009250 chr9:140009239-140009246 chr9:140009199-140009210
2	MAX	chr9:140008631-140008819	K562	blood:	n/a	n/a
3	MYC	chr9:140008303-140008813	NB4	blood:	n/a	n/a
4	MAX	chr9:140008609-140009746	ECC-1	luminal epithelium:	n/a	chr9:140009232-140009251 chr9:140009186-140009195 chr9:140009235-140009244 chr9:140009200-140009209 chr9:140009237-140009247 chr9:140009238-140009247 chr9:140009188-140009197 chr9:140009185-140009196 chr9:140009235-140009250 chr9:140009239-140009246 chr9:140009199-140009210
5	ZBTB7A	chr9:140008580-140009665	K562	blood:	n/a	chr9:140009303-140009317 chr9:140009374-140009382
6	MAX	chr9:140008632-140008850	H1-hESC	embryonic stem cell:	n/a	n/a
7	MXI1	chr9:140008635-140010062	IMR90	lung:	n/a	chr9:140009744-140009753 chr9:140009185-140009194 chr9:140009258-140009273
8	MXI1	chr9:140008639-140009941	SK-N-SH	brain:	n/a	chr9:140009744-140009753 chr9:140009185-140009194 chr9:140009258-140009273
9	E2F6	chr9:140008631-140008817	K562	blood:	n/a	n/a
10	HCFC1	chr9:140008661-140010449	Hela-S3	cervix:	n/a	n/a
11	MAX	chr9:140008748-140009595	K562	blood:	n/a	chr9:140009232-140009251 chr9:140009186-140009195 chr9:140009235-140009244 chr9:140009200-140009209 chr9:140009237-140009247 chr9:140009238-140009247 chr9:140009188-140009197 chr9:140009185-140009196 chr9:140009235-140009250 chr9:140009239-140009246 chr9:140009199-140009210
12	POLR2A	chr9:140008620-140008883	K562	blood:	n/a	n/a
13	ZBTB7A	chr9:140008616-140009750	ECC-1	luminal epithelium:	n/a	chr9:140009303-140009317 chr9:140009374-140009382
14	MAX	chr9:140008683-140009560	NB4	blood:	n/a	chr9:140009232-140009251 chr9:140009186-140009195 chr9:140009235-140009244 chr9:140009200-140009209 chr9:140009237-140009247 chr9:140009238-140009247 chr9:140009188-140009197 chr9:140009185-140009196 chr9:140009235-140009250 chr9:140009239-140009246 chr9:140009199-140009210
15	POLR2A	chr9:140008715-140009456	HUVEC	blood vessel:	n/a	n/a
16	E2F6	chr9:140008629-140009488	H1-hESC	embryonic stem cell:	n/a	chr9:140009222-140009233
17	MAX	chr9:140008638-140009678	HCT-116	colon:	n/a	chr9:140009232-140009251 chr9:140009186-140009195 chr9:140009235-140009244 chr9:140009200-140009209 chr9:140009237-140009247 chr9:140009238-140009247 chr9:140009188-140009197 chr9:140009185-140009196 chr9:140009235-140009250 chr9:140009239-140009246 chr9:140009199-140009210
18	ZBTB7A	chr9:140008530-140009530	K562	blood:	n/a	chr9:140009303-140009317 chr9:140009374-140009382
19	MAX	chr9:140008556-140009926	HCT-116	colon:	n/a	chr9:140009232-140009251 chr9:140009186-140009195 chr9:140009235-140009244 chr9:140009200-140009209 chr9:140009237-140009247 chr9:140009238-140009247 chr9:140009188-140009197 chr9:140009185-140009196 chr9:140009235-140009250 chr9:140009239-140009246 chr9:140009199-140009210
20	E2F6	chr9:140008619-140008855	K562	blood:	n/a	n/a
21	USF1	chr9:140008602-140009464	SK-N-SH_RA	brain:	n/a	chr9:140009323-140009339 chr9:140009317-140009333 chr9:140009320-140009336
22	POLR2A	chr9:140008710-140010259	K562	blood:	n/a	n/a
23	E2F6	chr9:140008688-140009618	A549	lung:	n/a	chr9:140009222-140009233
24	MAX	chr9:140008615-140009711	ECC-1	luminal epithelium:	n/a	chr9:140009232-140009251 chr9:140009186-140009195 chr9:140009235-140009244 chr9:140009200-140009209 chr9:140009237-140009247 chr9:140009238-140009247 chr9:140009188-140009197 chr9:140009185-140009196 chr9:140009235-140009250 chr9:140009239-140009246 chr9:140009199-140009210
25	ZBTB7A	chr9:140008637-140009819	ECC-1	luminal epithelium:	n/a	chr9:140009303-140009317 chr9:140009374-140009382
26	MAX	chr9:140008611-140009714	K562	blood:	n/a	chr9:140009232-140009251 chr9:140009186-140009195 chr9:140009235-140009244 chr9:140009200-140009209 chr9:140009237-140009247 chr9:140009238-140009247 chr9:140009188-140009197 chr9:140009185-140009196 chr9:140009235-140009250 chr9:140009239-140009246 chr9:140009199-140009210
27	MAZ	chr9:140008668-140009781	IMR90	lung:	n/a	chr9:140009232-140009251 chr9:140009186-140009195 chr9:140009235-140009244 chr9:140009200-140009209 chr9:140009238-140009247 chr9:140009188-140009197 chr9:140009185-140009196 chr9:140009235-140009250 chr9:140009239-140009246 chr9:140009199-140009210
28	E2F6	chr9:140008223-140009761	K562	blood:	n/a	chr9:140009222-140009233

No.	Distal block	Cell Line	Cell type
1	chr9:139968290..139973435-chr9:140007301..140011386,5	K562	blood:
2	chr9:140002951..140014435-chr9:140133298..140141296,16	MCF-7	breast:
3	chr9:139971143..139973305-chr9:140008709..140011009,2	MCF-7	breast:
4	chr9:139978705..139985965-chr9:140004535..140011196,17	MCF-7	breast:
5	chr9:140005266..140013855-chr9:140133577..140138267,15	K562	blood:
6	chr9:140006875..140010909-chr9:140013748..140019536,5	K562	blood:
7	chr9:140008433..140011918-chr9:140117998..140119680,4	K562	blood:
8	chr9:140007701..140010427-chr9:140093637..140097149,3	K562	blood:
9	chr9:139950230..139953110-chr9:140007242..140009409,2	MCF-7	breast:
10	chr9:139979404..139984708-chr9:140006242..140011845,8	K562	blood:
11	chr9:139942866..139946275-chr9:140007719..140010748,4	MCF-7	breast:
12	chr9:140006852..140009625-chr9:140147261..140150586,3	K562	blood:
13	chr9:140007929..140010708-chr9:140194883..140197083,2	MCF-7	breast:
14	chr9:140007777..140011586-chr9:140015113..140019585,6	K562	blood:
15	chr9:139979340..139983315-chr9:140006242..140009946,7	K562	blood:
16	chr9:140005278..140013743-chr9:140133784..140139915,15	K562	blood:
17	chr17:48943256..48944958-chr9:140008302..140010909,2	MCF-7	breast:
18	chr9:139971935..139974257-chr9:140007301..140008818,2	K562	blood:

Variant related genes	Relation type
DPP7	TF binding region
ENSG00000229980	Chromatin interaction
ENSG00000198435	Chromatin interaction
ENSG00000188986	Chromatin interaction
ENSG00000177239	Chromatin interaction
ENSG00000268996	Chromatin interaction
ENSG00000229257	Chromatin interaction
ENSG00000054179	Chromatin interaction
ENSG00000176058	Chromatin interaction
ENSG00000188229	Chromatin interaction
ENSG00000197355	Chromatin interaction
ENSG00000197191	Chromatin interaction
ENSG00000238824	Chromatin interaction
ENSG00000141232	Chromatin interaction

Extended variants
information (count: 102 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10117795	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10747048	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11145990	0.82[ASN][1000 genomes]
rs11145996	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11146000	0.81[ASN][1000 genomes]
rs13631	0.83[ASN][1000 genomes]
rs4880089	0.82[ASN][1000 genomes]
rs4880091	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4880198	0.82[ASN][1000 genomes]
rs4880199	0.82[ASN][1000 genomes]
rs6420280	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6420281	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6560658	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6560662	0.84[EUR][1000 genomes]
rs7853589	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:87 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469918	chr9:139254317-140068342	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	341 gene(s)	inside rSNPs	diseases
2	nsv540346	chr9:139360142-140164011	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	471 gene(s)	inside rSNPs	diseases
3	esv1821575	chr9:139395473-140068342	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
4	esv2422220	chr9:139478587-140244550	Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	454 gene(s)	inside rSNPs	diseases
5	nsv894442	chr9:139544437-140462099	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
6	nsv894452	chr9:139598108-140523429	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
7	nsv894455	chr9:139607966-140411547	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	417 gene(s)	inside rSNPs	diseases
8	nsv894462	chr9:139683224-140274164	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	353 gene(s)	inside rSNPs	diseases
9	nsv894463	chr9:139683224-140411547	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
10	nsv524322	chr9:139690144-140376668	Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	371 gene(s)	inside rSNPs	diseases
11	nsv894469	chr9:139693992-140118448	Bivalent Enhancer Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	200 gene(s)	inside rSNPs	diseases
12	nsv894470	chr9:139693992-140339091	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
13	nsv894474	chr9:139694521-140432318	Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	374 gene(s)	inside rSNPs	diseases
14	nsv540352	chr9:139695108-140351178	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
15	nsv894484	chr9:139709976-140382705	Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	360 gene(s)	inside rSNPs	diseases
16	nsv894485	chr9:139709976-140408904	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
17	nsv894486	chr9:139725120-140382705	Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	359 gene(s)	inside rSNPs	diseases
18	nsv894487	chr9:139725120-140449582	Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
19	esv1803771	chr9:139776400-140274255	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	321 gene(s)	inside rSNPs	diseases
20	nsv894498	chr9:139810595-140339091	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	324 gene(s)	inside rSNPs	diseases
21	nsv894499	chr9:139810595-140734161	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
22	esv1823828	chr9:139820363-140023694	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	121 gene(s)	inside rSNPs	diseases
23	esv1822764	chr9:139822266-140202692	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	313 gene(s)	inside rSNPs	diseases
24	nsv894501	chr9:139823670-140400275	Genic enhancers Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
25	nsv894502	chr9:139823670-140487108	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
26	esv1834381	chr9:139834195-140031290	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	125 gene(s)	inside rSNPs	diseases
27	esv1823555	chr9:139834714-140362439	Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	336 gene(s)	inside rSNPs	diseases
28	nsv894506	chr9:139841512-140143801	Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	278 gene(s)	inside rSNPs	diseases
29	nsv466690	chr9:139860631-140042320	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	117 gene(s)	inside rSNPs	diseases
30	nsv615989	chr9:139860631-140042320	Genic enhancers Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	117 gene(s)	inside rSNPs	diseases
31	nsv615990	chr9:139860631-140068342	Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	118 gene(s)	inside rSNPs	diseases
32	nsv894519	chr9:139860631-140123584	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	161 gene(s)	inside rSNPs	diseases
33	nsv894520	chr9:139860631-140135118	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	185 gene(s)	inside rSNPs	diseases
34	nsv894521	chr9:139860631-140228092	Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	308 gene(s)	inside rSNPs	diseases
35	nsv894522	chr9:139860631-140411547	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	331 gene(s)	inside rSNPs	diseases
36	nsv894523	chr9:139860631-140462099	Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
37	nsv894550	chr9:139879170-140039240	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	115 gene(s)	inside rSNPs	diseases
38	nsv894551	chr9:139879170-140118448	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	152 gene(s)	inside rSNPs	diseases
39	nsv894552	chr9:139879170-140135118	Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	183 gene(s)	inside rSNPs	diseases
40	nsv894553	chr9:139879170-140318758	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	313 gene(s)	inside rSNPs	diseases
41	nsv894554	chr9:139879170-140339091	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	313 gene(s)	inside rSNPs	diseases
42	nsv894556	chr9:139904037-140408904	Active TSS Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
43	nsv894558	chr9:139906359-140042320	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	94 gene(s)	inside rSNPs	diseases
44	nsv894559	chr9:139906359-140094605	Strong transcription Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	106 gene(s)	inside rSNPs	diseases
45	nsv894560	chr9:139906359-140135118	Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
46	nsv894561	chr9:139906359-140143801	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	252 gene(s)	inside rSNPs	diseases
47	nsv894562	chr9:139906359-140382705	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	307 gene(s)	inside rSNPs	diseases
48	nsv894563	chr9:139906359-140408904	Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
49	nsv894564	chr9:139906359-140432318	Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
50	nsv1044451	chr9:139910406-140292556	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10747049	DPP7	Cis_1M	lymphoblastoid	RTeQTL
rs10747049	MAN1B1	cis	Adipose Subcutaneous	GTEx
rs10747049	MAN1B1	cis	lung	GTEx
rs10747049	MAN1B1	cis	Whole Blood	GTEx

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:139998600-140008800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:139998600-140008800	Weak transcription	NH-A	brain
3	chr9:139998600-140009200	Weak transcription	Stomach Mucosa	stomach
4	chr9:139998600-140009400	Weak transcription	NHDF-Ad	bronchial
5	chr9:139999200-140009000	Weak transcription	Fetal Heart	heart
6	chr9:140004200-140009000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:140004400-140009400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:140005200-140009000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr9:140005400-140010000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr9:140005600-140008800	Weak transcription	Liver	Liver
11	chr9:140006200-140009000	Weak transcription	Primary T cells from cord blood	blood
12	chr9:140007400-140008800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr9:140007800-140008800	Weak transcription	Brain Angular Gyrus	brain
14	chr9:140007800-140008800	Weak transcription	Brain Substantia Nigra	brain
15	chr9:140007800-140009200	Active TSS	Stomach Smooth Muscle	stomach
16	chr9:140007800-140009400	Active TSS	Hela-S3	cervix
17	chr9:140007800-140009600	Enhancers	Fetal Brain Male	brain
18	chr9:140007800-140009800	Weak transcription	HepG2	liver
19	chr9:140008000-140008800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
20	chr9:140008000-140009000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr9:140008000-140009400	Active TSS	Brain Cingulate Gyrus	brain
22	chr9:140008000-140009400	Active TSS	HSMM	muscle
23	chr9:140008000-140009600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr9:140008000-140009600	Active TSS	Colon Smooth Muscle	Colon
25	chr9:140008000-140009800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr9:140008200-140008800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr9:140008200-140008800	Active TSS	Primary hematopoietic stem cells short term culture	blood
28	chr9:140008200-140008800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr9:140008200-140008800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr9:140008200-140008800	Active TSS	Cortex derived primary cultured neurospheres	brain
31	chr9:140008200-140008800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr9:140008200-140008800	Weak transcription	Duodenum Mucosa	Duodenum
33	chr9:140008200-140009000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr9:140008200-140009000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr9:140008200-140009000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr9:140008200-140009000	Active TSS	Brain Germinal Matrix	brain
37	chr9:140008200-140009000	Active TSS	Colonic Mucosa	Colon
38	chr9:140008200-140009000	Weak transcription	Gastric	stomach
39	chr9:140008200-140009000	Weak transcription	HUVEC	blood vessel
40	chr9:140008200-140009000	Weak transcription	NHEK	skin
41	chr9:140008200-140009200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
42	chr9:140008200-140009200	Active TSS	Primary T helper cells fromperipheralblood	blood
43	chr9:140008200-140009200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr9:140008200-140009200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr9:140008200-140009200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr9:140008200-140009200	Active TSS	Adipose Nuclei	Adipose
47	chr9:140008200-140009200	Active TSS	Small Intestine	intestine
48	chr9:140008200-140009400	Active TSS	Primary T cells fromperipheralblood	blood
49	chr9:140008200-140009400	Active TSS	Primary T helper cells PMA-I stimulated	--
50	chr9:140008200-140009400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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