Variant report

Variant	rs11146000
Chromosome Location	chr9:140009439-140009440
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ELF1	chr9:140008920-140009460	K562	blood:	n/a	chr9:140009325-140009337
2	POLR2A	chr9:140008936-140009514	GM12878	blood:	n/a	n/a
3	POLR2A	chr9:140009048-140009785	HCT-116	colon:	n/a	n/a
4	POLR2A	chr9:140008970-140009441	GM10847	blood:	n/a	n/a
5	POLR2A	chr9:140008889-140009600	K562	blood:	n/a	n/a
6	YY1	chr9:140008902-140009483	GM12878	blood:	n/a	chr9:140009323-140009334 chr9:140009324-140009338 chr9:140009323-140009332 chr9:140009323-140009337
7	MAX	chr9:140008993-140009815	Hela-S3	cervix:	n/a	chr9:140009232-140009251 chr9:140009186-140009195 chr9:140009235-140009244 chr9:140009200-140009209 chr9:140009237-140009247 chr9:140009238-140009247 chr9:140009188-140009197 chr9:140009185-140009196 chr9:140009235-140009250 chr9:140009239-140009246 chr9:140009199-140009210
8	POLR2A	chr9:140008962-140009446	MCF10A-Er-Src	breast:	n/a	n/a
9	POLR2A	chr9:140009018-140009519	A549	lung:	n/a	n/a
10	RCOR1	chr9:140008916-140009766	IMR90	lung:	n/a	n/a
11	MAX	chr9:140008909-140009936	MCF-7	breast:	n/a	chr9:140009232-140009251 chr9:140009186-140009195 chr9:140009235-140009244 chr9:140009200-140009209 chr9:140009237-140009247 chr9:140009238-140009247 chr9:140009188-140009197 chr9:140009185-140009196 chr9:140009235-140009250 chr9:140009239-140009246 chr9:140009199-140009210
12	MAX	chr9:140008619-140009997	A549	lung:	n/a	chr9:140009232-140009251 chr9:140009186-140009195 chr9:140009235-140009244 chr9:140009200-140009209 chr9:140009237-140009247 chr9:140009238-140009247 chr9:140009188-140009197 chr9:140009185-140009196 chr9:140009235-140009250 chr9:140009239-140009246 chr9:140009199-140009210
13	YY1	chr9:140008924-140009524	GM12878	blood:	n/a	chr9:140009323-140009334 chr9:140009324-140009338 chr9:140009323-140009332 chr9:140009323-140009337
14	STAT1	chr9:140009225-140009636	GM12878	blood:	n/a	n/a
15	RFX5	chr9:140009065-140009803	Hela-S3	cervix:	n/a	n/a
16	HA-E2F1	chr9:140009031-140009501	MCF-7	breast:	n/a	n/a
17	MAX	chr9:140009016-140009537	HUVEC	blood vessel:	n/a	chr9:140009232-140009251 chr9:140009186-140009195 chr9:140009235-140009244 chr9:140009200-140009209 chr9:140009237-140009247 chr9:140009238-140009247 chr9:140009188-140009197 chr9:140009185-140009196 chr9:140009235-140009250 chr9:140009239-140009246 chr9:140009199-140009210
18	POLR2A	chr9:140008933-140010307	Hela-S3	cervix:	n/a	n/a
19	POLR2A	chr9:140008844-140010169	SK-N-MC	brain:	n/a	n/a
20	USF1	chr9:140008904-140009763	HCT-116	colon:	n/a	chr9:140009323-140009339 chr9:140009317-140009333 chr9:140009320-140009336
21	POLR2A	chr9:140008874-140009530	MCF-7	breast:	n/a	n/a
22	POLR2A	chr9:140008997-140009748	A549	lung:	n/a	n/a
23	POLR2A	chr9:140008972-140009456	U87	brain:	n/a	n/a
24	POLR2A	chr9:140008938-140009499	GM18505	blood:	n/a	n/a
25	E2F6	chr9:140009024-140009440	H1-hESC	embryonic stem cell:	n/a	chr9:140009222-140009233
26	CHD2	chr9:140009005-140009558	GM12878	blood:	n/a	n/a
27	MAX	chr9:140008609-140009746	ECC-1	luminal epithelium:	n/a	chr9:140009232-140009251 chr9:140009186-140009195 chr9:140009235-140009244 chr9:140009200-140009209 chr9:140009237-140009247 chr9:140009238-140009247 chr9:140009188-140009197 chr9:140009185-140009196 chr9:140009235-140009250 chr9:140009239-140009246 chr9:140009199-140009210
28	ZBTB7A	chr9:140008580-140009665	K562	blood:	n/a	chr9:140009303-140009317 chr9:140009374-140009382
29	MYC	chr9:140009066-140009465	MCF-7	breast:	n/a	chr9:140009232-140009251 chr9:140009186-140009195 chr9:140009235-140009244 chr9:140009200-140009209 chr9:140009237-140009247 chr9:140009238-140009247 chr9:140009188-140009197 chr9:140009185-140009196 chr9:140009235-140009250 chr9:140009239-140009246 chr9:140009199-140009210
30	MTA3	chr9:140009271-140009863	GM12878	blood:	n/a	n/a
31	MAZ	chr9:140008974-140009885	Hela-S3	cervix:	n/a	chr9:140009232-140009251 chr9:140009186-140009195 chr9:140009235-140009244 chr9:140009200-140009209 chr9:140009238-140009247 chr9:140009188-140009197 chr9:140009185-140009196 chr9:140009235-140009250 chr9:140009239-140009246 chr9:140009199-140009210
32	USF1	chr9:140008892-140009575	SK-N-SH	brain:	n/a	chr9:140009323-140009339 chr9:140009317-140009333 chr9:140009320-140009336
33	MYC	chr9:140009021-140009845	Hela-S3	cervix:	n/a	chr9:140009232-140009251 chr9:140009186-140009195 chr9:140009235-140009244 chr9:140009200-140009209 chr9:140009237-140009247 chr9:140009238-140009247 chr9:140009188-140009197 chr9:140009185-140009196 chr9:140009235-140009250 chr9:140009239-140009246 chr9:140009199-140009210
34	POLR2A	chr9:140008991-140010045	PBDE	blood:	n/a	n/a
35	POLR2A	chr9:140008948-140009484	GM12878	blood:	n/a	n/a
36	STAT5A	chr9:140009237-140009736	GM12878	blood:	n/a	chr9:140009702-140009714
37	MXI1	chr9:140008635-140010062	IMR90	lung:	n/a	chr9:140009744-140009753 chr9:140009185-140009194 chr9:140009258-140009273
38	E2F6	chr9:140009027-140009477	K562	blood:	n/a	chr9:140009222-140009233
39	PBX3	chr9:140008900-140009608	SK-N-SH	brain:	n/a	n/a
40	POLR2A	chr9:140008883-140009488	ProgFib	skin:	n/a	n/a
41	FOXP2	chr9:140008976-140009506	PFSK-1	brain:	n/a	n/a
42	MYC	chr9:140008941-140009564	A549	lung:	n/a	chr9:140009232-140009251 chr9:140009186-140009195 chr9:140009235-140009244 chr9:140009200-140009209 chr9:140009237-140009247 chr9:140009238-140009247 chr9:140009188-140009197 chr9:140009185-140009196 chr9:140009235-140009250 chr9:140009239-140009246 chr9:140009199-140009210
43	MXI1	chr9:140008639-140009941	SK-N-SH	brain:	n/a	chr9:140009744-140009753 chr9:140009185-140009194 chr9:140009258-140009273
44	E2F6	chr9:140009038-140009485	A549	lung:	n/a	chr9:140009222-140009233
45	USF1	chr9:140008918-140009604	ECC-1	luminal epithelium:	n/a	chr9:140009323-140009339 chr9:140009317-140009333 chr9:140009320-140009336
46	BCL3	chr9:140009388-140009731	A549	lung:	n/a	chr9:140009655-140009668
47	POLR2A	chr9:140008958-140009506	GM19193	blood:	n/a	n/a
48	GATA1	chr9:140009142-140009765	PBDE	blood:	n/a	n/a
49	POLR2A	chr9:140008951-140009481	K562	blood:	n/a	n/a
50	UBTF	chr9:140009103-140009585	K562	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:140009395-140009445	Hela-S3	cervix:	n/a
2	chr9:140009395-140009445	SK-N-SH	brain:	n/a
3	chr9:140009395-140009445	PFSK-1	brain:	n/a
4	chr9:140009395-140009445	HIPEpiC	eye:	n/a
5	chr9:140009395-140009445	SKMC	muscle:	n/a
6	chr9:140009395-140009445	Hepatocyte	liver:	n/a
7	chr9:140009395-140009445	ProgFib	skin:	n/a
8	chr9:140009395-140009445	GM12892	blood:	n/a
9	chr9:140009395-140009445	PANC-1	pancreas:	n/a
10	chr9:140009395-140009445	HCPEpiC	choroid plexus:	n/a
11	chr9:140009395-140009445	ECC-1	luminal epithelium:	n/a
12	chr9:140009395-140009445	GM06990	blood:	n/a
13	chr9:140009395-140009445	NT2-D1	testis:	n/a
14	chr9:140009395-140009445	Jurkat	blood:	n/a
15	chr9:140009395-140009445	NHDF-neo	bronchial:	n/a
16	chr9:140009395-140009445	HCF	heart:	n/a
17	chr9:140009395-140009445	A549	lung:	n/a
18	chr9:140009395-140009445	PrEC	prostate:	n/a
19	chr9:140009395-140009445	SK-N-SH_RA	brain:	n/a
20	chr9:140009395-140009445	AG09309	skin:	n/a
21	chr9:140009395-140009445	U87	brain:	n/a
22	chr9:140009395-140009445	RPTEC	kidney:	n/a
23	chr9:140009395-140009445	AG04450	lung:	fetal
24	chr9:140009395-140009445	GM12891	blood:	n/a
25	chr9:140009395-140009445	IMR90	lung:	fetal
26	chr9:140009395-140009445	HNPCEpiC	eye:	n/a
27	chr9:140009395-140009445	T-47D	breast:	n/a
28	chr9:140009395-140009445	AG04449	skin:	fetal
29	chr9:140009395-140009445	ovcar-3	ovarian:	n/a
30	chr9:140009395-140009445	H1-hESC	embryonic stem cell:	embryo
31	chr9:140009395-140009445	HL-60	blood:	n/a
32	chr9:140009395-140009445	AG10803	skin:	n/a
33	chr9:140009395-140009445	HEEpiC	esophagus:	n/a
34	chr9:140009395-140009445	GM19239	blood:	n/a
35	chr9:140009395-140009445	HAEpiC	amniotic membrane:	n/a
36	chr9:140009395-140009445	HepG2	liver:	n/a
37	chr9:140009395-140009445	CMK	blood:	n/a
38	chr9:140009395-140009445	HPAEpiC	pulmonary alveolar:	n/a
39	chr9:140009395-140009445	MCF10A-Er-Src	breast:	n/a
40	chr9:140009395-140009445	AoSMC	blood vessel:	n/a
41	chr9:140009395-140009445	LNCaP	prostate:	n/a
42	chr9:140009395-140009445	BE2_C	brain:	n/a
43	chr9:140009395-140009445	MCF-7	breast:	n/a
44	chr9:140009395-140009445	GM12878	blood:	n/a
45	chr9:140009395-140009445	SAEC	small airway:	n/a
46	chr9:140009395-140009445	NB4	blood:	n/a
47	chr9:140009395-140009445	HEK293	kidney:	embryo
48	chr9:140009395-140009445	NHBE	bronchial:	n/a
49	chr9:140009395-140009445	HRCEpiC	kidney:	n/a
50	chr9:140009395-140009445	BJ	skin:	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:139968290..139973435-chr9:140007301..140011386,5	K562	blood:
2	chr9:140002951..140014435-chr9:140133298..140141296,16	MCF-7	breast:
3	chr9:139971143..139973305-chr9:140008709..140011009,2	MCF-7	breast:
4	chr9:139978705..139985965-chr9:140004535..140011196,17	MCF-7	breast:
5	chr9:140009112..140011856-chr9:140121557..140124163,3	K562	blood:
6	chr9:140009116..140011236-chr9:140113469..140116260,2	K562	blood:
7	chr9:139938250..139940561-chr9:140009078..140010901,2	MCF-7	breast:
8	chr9:140005266..140013855-chr9:140133577..140138267,15	K562	blood:
9	chr9:140006875..140010909-chr9:140013748..140019536,5	K562	blood:
10	chr9:140008827..140014776-chr9:140119590..140123750,6	MCF-7	breast:
11	chr9:140008433..140011918-chr9:140117998..140119680,4	K562	blood:
12	chr9:140007701..140010427-chr9:140093637..140097149,3	K562	blood:
13	chr9:139979404..139984708-chr9:140006242..140011845,8	K562	blood:
14	chr9:139942866..139946275-chr9:140007719..140010748,4	MCF-7	breast:
15	chr9:140006852..140009625-chr9:140147261..140150586,3	K562	blood:
16	chr9:139938282..139940801-chr9:140008771..140010710,2	MCF-7	breast:
17	chr9:140007929..140010708-chr9:140194883..140197083,2	MCF-7	breast:
18	chr9:140007777..140011586-chr9:140015113..140019585,6	K562	blood:
19	chr1:182808319..182809028-chr9:140009210..140009887,2	Hela-S3	cervix:
20	chr9:139979340..139983315-chr9:140006242..140009946,7	K562	blood:
21	chr9:140005278..140013743-chr9:140133784..140139915,15	K562	blood:
22	chr17:48943256..48944958-chr9:140008302..140010909,2	MCF-7	breast:

Variant related genes	Relation type
DPP7	TF binding region
DPP7	CpG island
ENSG00000054179	Chromatin interaction
ENSG00000233198	Chromatin interaction
ENSG00000188986	Chromatin interaction
ENSG00000229980	Chromatin interaction
ENSG00000268996	Chromatin interaction
ENSG00000197191	Chromatin interaction
ENSG00000212864	Chromatin interaction
ENSG00000176058	Chromatin interaction
ENSG00000135829	Chromatin interaction
ENSG00000141232	Chromatin interaction
ENSG00000177239	Chromatin interaction
ENSG00000198435	Chromatin interaction
ENSG00000107281	Chromatin interaction
ENSG00000188229	Chromatin interaction
ENSG00000238824	Chromatin interaction
ENSG00000197355	Chromatin interaction

Extended variants
information (count: 90 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10747048	0.83[ASN][1000 genomes]
rs10747049	0.81[ASN][1000 genomes]
rs11145996	0.80[ASN][1000 genomes]
rs6420281	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:86 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469918	chr9:139254317-140068342	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	341 gene(s)	inside rSNPs	diseases
2	nsv540346	chr9:139360142-140164011	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	471 gene(s)	inside rSNPs	diseases
3	esv1821575	chr9:139395473-140068342	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
4	esv2422220	chr9:139478587-140244550	Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	454 gene(s)	inside rSNPs	diseases
5	nsv894442	chr9:139544437-140462099	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
6	nsv894452	chr9:139598108-140523429	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
7	nsv894455	chr9:139607966-140411547	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	417 gene(s)	inside rSNPs	diseases
8	nsv894462	chr9:139683224-140274164	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	353 gene(s)	inside rSNPs	diseases
9	nsv894463	chr9:139683224-140411547	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
10	nsv524322	chr9:139690144-140376668	Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	371 gene(s)	inside rSNPs	diseases
11	nsv894469	chr9:139693992-140118448	Bivalent Enhancer Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	200 gene(s)	inside rSNPs	diseases
12	nsv894470	chr9:139693992-140339091	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
13	nsv894474	chr9:139694521-140432318	Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	374 gene(s)	inside rSNPs	diseases
14	nsv540352	chr9:139695108-140351178	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
15	nsv894484	chr9:139709976-140382705	Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	360 gene(s)	inside rSNPs	diseases
16	nsv894485	chr9:139709976-140408904	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
17	nsv894486	chr9:139725120-140382705	Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	359 gene(s)	inside rSNPs	diseases
18	nsv894487	chr9:139725120-140449582	Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
19	esv1803771	chr9:139776400-140274255	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	321 gene(s)	inside rSNPs	diseases
20	nsv894498	chr9:139810595-140339091	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	324 gene(s)	inside rSNPs	diseases
21	nsv894499	chr9:139810595-140734161	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
22	esv1823828	chr9:139820363-140023694	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	121 gene(s)	inside rSNPs	diseases
23	esv1822764	chr9:139822266-140202692	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	313 gene(s)	inside rSNPs	diseases
24	nsv894501	chr9:139823670-140400275	Genic enhancers Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
25	nsv894502	chr9:139823670-140487108	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
26	esv1834381	chr9:139834195-140031290	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	125 gene(s)	inside rSNPs	diseases
27	esv1823555	chr9:139834714-140362439	Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	336 gene(s)	inside rSNPs	diseases
28	nsv894506	chr9:139841512-140143801	Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	278 gene(s)	inside rSNPs	diseases
29	nsv466690	chr9:139860631-140042320	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	117 gene(s)	inside rSNPs	diseases
30	nsv615989	chr9:139860631-140042320	Genic enhancers Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	117 gene(s)	inside rSNPs	diseases
31	nsv615990	chr9:139860631-140068342	Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	118 gene(s)	inside rSNPs	diseases
32	nsv894519	chr9:139860631-140123584	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	161 gene(s)	inside rSNPs	diseases
33	nsv894520	chr9:139860631-140135118	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	185 gene(s)	inside rSNPs	diseases
34	nsv894521	chr9:139860631-140228092	Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	308 gene(s)	inside rSNPs	diseases
35	nsv894522	chr9:139860631-140411547	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	331 gene(s)	inside rSNPs	diseases
36	nsv894523	chr9:139860631-140462099	Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
37	nsv894550	chr9:139879170-140039240	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	115 gene(s)	inside rSNPs	diseases
38	nsv894551	chr9:139879170-140118448	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	152 gene(s)	inside rSNPs	diseases
39	nsv894552	chr9:139879170-140135118	Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	183 gene(s)	inside rSNPs	diseases
40	nsv894553	chr9:139879170-140318758	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	313 gene(s)	inside rSNPs	diseases
41	nsv894554	chr9:139879170-140339091	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	313 gene(s)	inside rSNPs	diseases
42	nsv894556	chr9:139904037-140408904	Active TSS Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
43	nsv894558	chr9:139906359-140042320	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	94 gene(s)	inside rSNPs	diseases
44	nsv894559	chr9:139906359-140094605	Strong transcription Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	106 gene(s)	inside rSNPs	diseases
45	nsv894560	chr9:139906359-140135118	Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
46	nsv894561	chr9:139906359-140143801	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	252 gene(s)	inside rSNPs	diseases
47	nsv894562	chr9:139906359-140382705	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	307 gene(s)	inside rSNPs	diseases
48	nsv894563	chr9:139906359-140408904	Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
49	nsv894564	chr9:139906359-140432318	Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
50	nsv1044451	chr9:139910406-140292556	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11146000	MAN1B1	cis	Whole Blood	GTEx
rs11146000	DPP7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:140005400-140010000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr9:140007800-140009600	Enhancers	Fetal Brain Male	brain
3	chr9:140007800-140009800	Weak transcription	HepG2	liver
4	chr9:140008000-140009600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:140008000-140009600	Active TSS	Colon Smooth Muscle	Colon
6	chr9:140008000-140009800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr9:140008200-140009600	Active TSS	Breast Myoepithelial Primary Cells	Breast
8	chr9:140008200-140009600	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
9	chr9:140008200-140009600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr9:140008200-140009600	Active TSS	Brain Anterior Caudate	brain
11	chr9:140008200-140009600	Active TSS	Duodenum Smooth Muscle	Duodenum
12	chr9:140008200-140009600	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr9:140008200-140009600	Active TSS	Rectal Mucosa Donor 31	rectum
14	chr9:140008200-140009600	Active TSS	Rectal Smooth Muscle	rectum
15	chr9:140008200-140009800	Active TSS	NHLF	lung
16	chr9:140008400-140009600	Active TSS	Aorta	Aorta
17	chr9:140008400-140009800	Bivalent/Poised TSS	Fetal Brain Female	brain
18	chr9:140008600-140009600	Active TSS	A549	lung
19	chr9:140008600-140009600	Active TSS	GM12878-XiMat	blood
20	chr9:140008600-140009800	Active TSS	HSMMtube	muscle
21	chr9:140008800-140009600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr9:140008800-140009600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
23	chr9:140008800-140009600	Active TSS	Primary T killer memory cells from peripheral blood	blood
24	chr9:140008800-140009600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
25	chr9:140008800-140009600	Active TSS	Brain Angular Gyrus	brain
26	chr9:140008800-140009600	Active TSS	Brain Substantia Nigra	brain
27	chr9:140008800-140009800	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr9:140008800-140009800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
29	chr9:140008800-140010000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr9:140009000-140009600	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr9:140009000-140009600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
32	chr9:140009000-140009600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
33	chr9:140009000-140009600	Flanking Active TSS	Primary hematopoietic stem cells	blood
34	chr9:140009000-140009600	Active TSS	Primary T helper naive cells from peripheral blood	blood
35	chr9:140009000-140009800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
36	chr9:140009000-140009800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr9:140009000-140009800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr9:140009000-140009800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
39	chr9:140009000-140009800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
40	chr9:140009000-140012000	Enhancers	Fetal Heart	heart
41	chr9:140009200-140009600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
42	chr9:140009200-140009600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr9:140009200-140009600	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
44	chr9:140009200-140009600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
45	chr9:140009200-140009600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
46	chr9:140009200-140009600	Flanking Active TSS	Liver	Liver
47	chr9:140009200-140009600	Flanking Active TSS	Lung	lung
48	chr9:140009200-140009600	Flanking Active TSS	Placenta Amnion	Placenta Amnion
49	chr9:140009200-140009600	Enhancers	Sigmoid Colon	Sigmoid Colon
50	chr9:140009200-140009600	Enhancers	Small Intestine	intestine

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