Variant report

Variant	rs10748317
Chromosome Location	chr12:42187394-42187395
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1032587	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10785290	0.86[AMR][1000 genomes]
rs1390998	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1497188	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1497191	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1546193	0.86[AMR][1000 genomes]
rs1845976	0.86[AMR][1000 genomes]
rs4595607	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4768007	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4768365	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4768369	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4768370	0.84[EUR][1000 genomes]
rs4768374	0.86[AMR][1000 genomes]
rs6582363	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7299055	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73126166	0.84[EUR][1000 genomes]
rs7962219	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7980720	0.82[EUR][1000 genomes]
rs904075	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832386	chr12:42017259-42189476	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv899043	chr12:42058138-42313665	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv899044	chr12:42058138-42321161	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1047870	chr12:42158954-42254373	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
5	nsv1041975	chr12:42159517-42254373	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
6	nsv1037646	chr12:42160758-42254373	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
7	nsv1042971	chr12:42170661-42205843	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42187000-42188200	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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