Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1032587	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10748317	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10785290	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1390998	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1497188	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1497191	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1546193	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1553033	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1845976	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4595607	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4768007	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4768365	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4768369	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4768370	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4768374	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6582363	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7299055	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73126166	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73128112	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7962219	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7968184	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7978877	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7980720	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832386	chr12:42017259-42189476	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv899043	chr12:42058138-42313665	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv899044	chr12:42058138-42321161	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1047870	chr12:42158954-42254373	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
5	nsv1041975	chr12:42159517-42254373	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
6	nsv1037646	chr12:42160758-42254373	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
7	nsv1042971	chr12:42170661-42205843	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42187600-42189600	Enhancers	Primary hematopoietic stem cells	blood
2	chr12:42187600-42189800	Enhancers	Fetal Brain Male	brain
3	chr12:42188000-42190400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr12:42188000-42190600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr12:42188200-42189200	Enhancers	Brain Hippocampus Middle	brain
6	chr12:42188200-42189200	Flanking Active TSS	HUVEC	blood vessel
7	chr12:42188200-42189400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr12:42188200-42190000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr12:42188200-42190200	Enhancers	Fetal Stomach	stomach
10	chr12:42188400-42189200	Enhancers	Fetal Kidney	kidney
11	chr12:42188400-42189400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr12:42188600-42189200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr12:42188600-42189800	Enhancers	Brain Cingulate Gyrus	brain
14	chr12:42188600-42192600	Enhancers	Brain Germinal Matrix	brain
15	chr12:42188800-42189200	Enhancers	Adipose Nuclei	Adipose
16	chr12:42188800-42189200	Flanking Active TSS	Fetal Lung	lung
17	chr12:42188800-42189200	Enhancers	Psoas Muscle	Psoas
18	chr12:42188800-42189600	Enhancers	Fetal Muscle Leg	muscle
19	chr12:42189000-42189400	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr12:42189000-42189400	Flanking Active TSS	Fetal Brain Female	brain

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