Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1032587	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10785290	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1390998	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1497188	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1497191	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1546193	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1553033	0.86[EUR][1000 genomes]
rs1845976	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4595607	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4768007	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4768365	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4768369	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4768370	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4768374	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6582363	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7299055	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73126166	0.92[EUR][1000 genomes]
rs73128112	0.82[EUR][1000 genomes]
rs7962219	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7968184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7980720	0.90[EUR][1000 genomes]
rs904075	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv832386	chr12:42017259-42189476	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv899043	chr12:42058138-42313665	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv899044	chr12:42058138-42321161	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv899045	chr12:42118062-42174431	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42141200-42142800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr12:42141200-42142800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr12:42141400-42142800	Enhancers	Primary hematopoietic stem cells	blood

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