Variant report

Variant	rs10748681
Chromosome Location	chr10:98271878-98271879
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:98155318..98156359-chr10:98270559..98271887,7	MCF-7	breast:
2	chr10:98133716..98135403-chr10:98271764..98273764,2	K562	blood:
3	chr10:98267259..98269511-chr10:98271811..98273644,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095587	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10509711	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882819	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4919036	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7915046	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9093	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9633704	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10748681	GOLGA7B	cis	parietal	SCAN
rs10748681	FRAT1	cis	parietal	SCAN

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98266400-98272200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr10:98267000-98272200	Weak transcription	Pancreas	Pancrea
3	chr10:98267600-98272000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:98268400-98272400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr10:98269400-98272400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:98269400-98272400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:98270600-98272000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
8	chr10:98270600-98272000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
9	chr10:98271000-98272000	Enhancers	NH-A	brain
10	chr10:98271000-98272000	Enhancers	NHEK	skin
11	chr10:98271000-98272200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:98271000-98272200	Enhancers	Left Ventricle	heart
13	chr10:98271200-98272000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
14	chr10:98271200-98272000	Bivalent Enhancer	HepG2	liver
15	chr10:98271200-98272200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr10:98271200-98272200	Bivalent Enhancer	Fetal Muscle Leg	muscle
17	chr10:98271400-98272000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
18	chr10:98271400-98272000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr10:98271400-98272000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:98271400-98272200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
21	chr10:98271400-98272200	Enhancers	Brain Cingulate Gyrus	brain
22	chr10:98271400-98272400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
23	chr10:98271400-98272400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
24	chr10:98271400-98272400	Enhancers	Fetal Heart	heart
25	chr10:98271400-98272400	Bivalent Enhancer	Stomach Mucosa	stomach
26	chr10:98271600-98272000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr10:98271600-98272200	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
28	chr10:98271600-98272200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr10:98271600-98272200	Enhancers	Brain Anterior Caudate	brain
30	chr10:98271600-98272200	Enhancers	Brain Hippocampus Middle	brain
31	chr10:98271600-98272400	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr10:98271600-98272400	Weak transcription	HSMMtube	muscle
33	chr10:98271800-98272000	Enhancers	Brain Substantia Nigra	brain
34	chr10:98271800-98272200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
35	chr10:98271800-98272200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr10:98271800-98272200	Enhancers	Primary B cells from peripheral blood	blood
37	chr10:98271800-98272200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr10:98271800-98272400	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
39	chr10:98271800-98273400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell

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