Variant report

Variant	rs7915046
Chromosome Location	chr10:98285951-98285952
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98273766..98276351-chr10:98285561..98287495,2	K562	blood:
2	chr10:98277034..98279925-chr10:98283412..98287381,4	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10509711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10748681	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882819	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4919036	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9633704	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98274200-98303600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr10:98274200-98314000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:98274200-98328600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:98274200-98328600	Weak transcription	Pancreas	Pancrea
5	chr10:98274200-98331200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:98274400-98286000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr10:98274400-98287200	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:98274400-98287200	Weak transcription	K562	blood
9	chr10:98274400-98288400	Weak transcription	Brain Hippocampus Middle	brain
10	chr10:98274400-98303400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:98275200-98306600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr10:98275400-98289200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr10:98275600-98292400	Weak transcription	Stomach Mucosa	stomach
14	chr10:98276400-98289600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:98276400-98301600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr10:98276400-98319800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr10:98276400-98343200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr10:98277200-98286000	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr10:98277200-98295200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr10:98277400-98293400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:98277400-98315400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:98277800-98289200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr10:98277800-98293000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:98277800-98295800	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr10:98277800-98330400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr10:98278000-98293200	Strong transcription	Liver	Liver
27	chr10:98278000-98293400	Strong transcription	Duodenum Mucosa	Duodenum
28	chr10:98278000-98295200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr10:98278400-98295200	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr10:98278600-98318800	Weak transcription	Small Intestine	intestine
31	chr10:98278800-98288800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr10:98279000-98292200	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr10:98279000-98293000	Strong transcription	Dnd41	blood
34	chr10:98279200-98291400	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr10:98280400-98291600	Strong transcription	Primary B cells from cord blood	blood
36	chr10:98280400-98291600	Strong transcription	HUVEC	blood vessel
37	chr10:98280400-98295400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr10:98280400-98295800	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr10:98281800-98288800	Weak transcription	Fetal Brain Female	brain
40	chr10:98282000-98286200	Weak transcription	NHEK	skin
41	chr10:98282000-98288800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr10:98282400-98294000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr10:98282800-98288400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr10:98283200-98300600	Weak transcription	Fetal Stomach	stomach
45	chr10:98283400-98293600	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr10:98283400-98300600	Weak transcription	Fetal Intestine Small	intestine
47	chr10:98284200-98286800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr10:98284200-98292800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr10:98284200-98293400	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr10:98284200-98294200	Strong transcription	Primary B cells from peripheral blood	blood

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