Variant report

Variant	rs10749565
Chromosome Location	chr10:89892100-89892101
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89868617..89870229-chr10:89891624..89893252,2	K562	blood:
2	chr10:89890101..89893895-chr10:89894982..89898353,4	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10887784	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7914010	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs945562	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv895877	chr10:89884031-89905498	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10749565	IFIT3	cis	parietal	SCAN
rs10749565	IFIT1	cis	parietal	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89878800-89892200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:89879200-89896600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:89881200-89903800	Weak transcription	Primary B cells from cord blood	blood
4	chr10:89890800-89892400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:89890800-89892400	Enhancers	HMEC	breast
6	chr10:89890800-89892400	Enhancers	NHEK	skin
7	chr10:89891000-89892200	Enhancers	Pancreas	Pancrea
8	chr10:89891000-89892600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr10:89891000-89892600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:89891400-89892200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:89891400-89892200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:89891400-89892200	Enhancers	Colon Smooth Muscle	Colon
13	chr10:89891400-89892200	Enhancers	Psoas Muscle	Psoas
14	chr10:89891600-89892200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr10:89891600-89892400	Enhancers	Gastric	stomach
16	chr10:89891600-89892400	Enhancers	NHLF	lung
17	chr10:89891600-89892600	Active TSS	Skeletal Muscle Male	skeletal muscle
18	chr10:89891800-89892400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
19	chr10:89891800-89892400	Enhancers	NHDF-Ad	bronchial
20	chr10:89891800-89893800	Weak transcription	Aorta	Aorta
21	chr10:89891800-89894200	Active TSS	Skeletal Muscle Female	skeletal muscle
22	chr10:89892000-89895000	Weak transcription	Adipose Nuclei	Adipose

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