Variant report

Variant	rs10749602
Chromosome Location	chr10:91023553-91023554
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1960574	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2151004	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2151006	0.86[EUR][1000 genomes]
rs7922193	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv947683	chr10:91020881-91035791	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10749602	IFIT5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91020000-91023600	Enhancers	Brain Angular Gyrus	brain
2	chr10:91020000-91023600	Enhancers	Brain Cingulate Gyrus	brain
3	chr10:91020000-91023600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:91020000-91023600	Enhancers	NHEK	skin
5	chr10:91020000-91024000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr10:91020200-91024200	Enhancers	Placenta Amnion	Placenta Amnion
7	chr10:91020400-91023600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:91020400-91023600	Enhancers	NHDF-Ad	bronchial
9	chr10:91020400-91023800	Enhancers	Osteobl	bone
10	chr10:91020600-91024200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:91020600-91025400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr10:91020600-91027800	Weak transcription	Right Ventricle	heart
13	chr10:91020600-91035000	Weak transcription	Esophagus	oesophagus
14	chr10:91020800-91037600	Weak transcription	Aorta	Aorta
15	chr10:91021000-91031000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:91021400-91023600	Enhancers	Brain Hippocampus Middle	brain
17	chr10:91021400-91024000	Enhancers	Placenta	Placenta
18	chr10:91021600-91024000	Enhancers	Brain Substantia Nigra	brain
19	chr10:91021800-91023600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:91021800-91023600	Enhancers	Right Atrium	heart
21	chr10:91022000-91023600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:91022000-91023800	Enhancers	Fetal Muscle Leg	muscle
23	chr10:91022400-91023800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr10:91022400-91024600	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr10:91022400-91026400	Weak transcription	Colon Smooth Muscle	Colon
26	chr10:91022400-91029600	Weak transcription	Adipose Nuclei	Adipose
27	chr10:91022600-91023800	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr10:91022800-91023800	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr10:91022800-91024000	Weak transcription	Fetal Intestine Small	intestine
30	chr10:91023000-91024800	Enhancers	Hela-S3	cervix
31	chr10:91023000-91026400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr10:91023200-91026600	Weak transcription	A549	lung
33	chr10:91023200-91029400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr10:91023400-91023600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr10:91023400-91023600	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr10:91023400-91023600	Enhancers	Brain Anterior Caudate	brain
37	chr10:91023400-91023800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr10:91023400-91023800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr10:91023400-91023800	Enhancers	Pancreas	Pancrea
40	chr10:91023400-91023800	Enhancers	Psoas Muscle	Psoas
41	chr10:91023400-91024000	Enhancers	Fetal Muscle Trunk	muscle
42	chr10:91023400-91026400	Weak transcription	Fetal Heart	heart
43	chr10:91023400-91026600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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