Variant report

Variant	rs2151006
Chromosome Location	chr10:91034358-91034359
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10749602	0.86[EUR][1000 genomes]
rs1122783	0.81[YRI][hapmap];0.83[AFR][1000 genomes]
rs1960574	1.00[CHB][hapmap];0.81[YRI][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2151004	1.00[CHB][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7068816	0.81[CEU][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7922193	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv947683	chr10:91020881-91035791	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2151006	IFIT5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91020600-91035000	Weak transcription	Esophagus	oesophagus
2	chr10:91020800-91037600	Weak transcription	Aorta	Aorta
3	chr10:91023800-91035000	Weak transcription	Psoas Muscle	Psoas
4	chr10:91027000-91034400	Weak transcription	A549	lung
5	chr10:91027200-91037400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr10:91027400-91036600	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:91028000-91035000	Weak transcription	Brain Hippocampus Middle	brain
8	chr10:91028000-91037600	Weak transcription	Colon Smooth Muscle	Colon
9	chr10:91030000-91034400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:91030000-91034400	Weak transcription	NHDF-Ad	bronchial
11	chr10:91030000-91034800	Weak transcription	Brain Substantia Nigra	brain
12	chr10:91030400-91034400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr10:91030400-91034800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:91030400-91034800	Weak transcription	Hela-S3	cervix
15	chr10:91030600-91037600	Weak transcription	Adipose Nuclei	Adipose
16	chr10:91031600-91035000	Weak transcription	Fetal Heart	heart
17	chr10:91031600-91037600	Weak transcription	Fetal Intestine Large	intestine
18	chr10:91032000-91034400	Weak transcription	Placenta	Placenta
19	chr10:91033400-91037600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr10:91033600-91037400	Weak transcription	Fetal Intestine Small	intestine
21	chr10:91034000-91035000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:91034000-91035000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:91034000-91036000	Enhancers	NHLF	lung
24	chr10:91034200-91035200	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr10:91034200-91035800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:91034200-91036000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr10:91034200-91036000	Enhancers	Osteobl	bone
28	chr10:91034200-91036200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr10:91034200-91037400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr10:91034200-91039200	Enhancers	Placenta Amnion	Placenta Amnion

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links