Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119714767..119716400-chr11:119833403..119835502,2	MCF-7	breast:
2	chr11:119833649..119836146-chr11:119840215..119843105,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10790357	0.89[ASN][1000 genomes]
rs10790359	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10790360	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10892504	0.89[ASN][1000 genomes]
rs11217602	0.80[AFR][1000 genomes]
rs1787024	0.88[ASN][1000 genomes]
rs1944504	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1944505	0.89[ASN][1000 genomes]
rs4245210	0.94[AFR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs621150	0.90[AFR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs626466	0.86[ASN][1000 genomes]
rs636518	0.85[ASN][1000 genomes]
rs651055	0.84[ASN][1000 genomes]
rs6589784	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs662318	0.90[AFR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs677027	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs677428	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs678914	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs731392	0.89[ASN][1000 genomes]
rs731393	0.89[ASN][1000 genomes]
rs7342270	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7944850	0.80[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7951479	0.89[ASN][1000 genomes]
rs7951593	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs949096	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119817200-119835600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:119833400-119834800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr11:119833400-119836400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:119834200-119835200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr11:119834200-119835200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr11:119834200-119836200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:119834200-119836600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:119834200-119837200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr11:119834400-119835000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr11:119834400-119836000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr11:119834400-119836200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr11:119834400-119836400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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