Variant report

Variant	rs1787024
Chromosome Location	chr11:119845535-119845536
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10750167	0.88[ASN][1000 genomes]
rs10790357	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10790359	0.90[ASN][1000 genomes]
rs10790360	0.90[ASN][1000 genomes]
rs10892504	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11217601	0.88[ASN][1000 genomes]
rs1944504	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1944505	0.98[ASN][1000 genomes]
rs4245210	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4938741	0.88[ASN][1000 genomes]
rs601052	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs602030	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs615539	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs621150	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs626466	0.95[ASN][1000 genomes]
rs636518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs651055	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6589784	0.90[ASN][1000 genomes]
rs662318	0.85[ASN][1000 genomes]
rs677027	0.84[ASN][1000 genomes]
rs677428	0.84[ASN][1000 genomes]
rs678914	0.81[ASN][1000 genomes]
rs731392	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs731393	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7342270	0.85[ASN][1000 genomes]
rs7944850	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7951479	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7951593	0.90[ASN][1000 genomes]
rs949096	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1037777	chr11:119842515-119898368	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv541179	chr11:119842515-119898368	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119836200-119845600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:119841600-119845600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:119844200-119846200	Enhancers	Fetal Muscle Trunk	muscle
4	chr11:119844200-119847800	Enhancers	Fetal Muscle Leg	muscle
5	chr11:119844200-119849600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:119844400-119846000	Enhancers	Brain Anterior Caudate	brain
7	chr11:119844400-119846200	Enhancers	Brain Cingulate Gyrus	brain
8	chr11:119844400-119846200	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr11:119844400-119846400	Enhancers	Brain Angular Gyrus	brain
10	chr11:119844400-119846600	Enhancers	Brain Hippocampus Middle	brain
11	chr11:119844400-119846600	Enhancers	Brain Substantia Nigra	brain
12	chr11:119844400-119847000	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr11:119844400-119847000	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr11:119844400-119847200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr11:119844600-119846000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr11:119844600-119846200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr11:119844600-119846800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr11:119844600-119846800	Enhancers	Adipose Nuclei	Adipose
19	chr11:119844600-119847200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:119844600-119847400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr11:119844800-119845800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:119844800-119846200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr11:119845200-119846200	Enhancers	Fetal Stomach	stomach
24	chr11:119845200-119846200	Weak transcription	Right Atrium	heart
25	chr11:119845200-119846400	Weak transcription	Psoas Muscle	Psoas
26	chr11:119845200-119847200	Enhancers	Fetal Brain Male	brain
27	chr11:119845200-119847800	Enhancers	Brain Germinal Matrix	brain
28	chr11:119845400-119846000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
29	chr11:119845400-119846400	Weak transcription	Fetal Brain Female	brain
30	chr11:119845400-119846800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell

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