Variant report

Variant	rs10751135
Chromosome Location	chr11:85885461-85885462
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85848367..85849977-chr11:85884003..85885700,2	K562	blood:
2	chr11:85778265..85780828-chr11:85883651..85886278,2	K562	blood:
3	chr11:85779660..85782630-chr11:85885174..85887407,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000073921	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10792836	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11820048	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs6592276	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7107737	0.88[ASN][1000 genomes]
rs7118445	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7924368	1.00[CEU][hapmap]
rs7930421	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7934320	1.00[CEU][hapmap]
rs7951433	1.00[TSI][hapmap]
rs9666271	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	esv2757460	chr11:85869944-85905513	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759846	chr11:85869944-85905513	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1040400	chr11:85883303-85898809	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1043422	chr11:85883840-85898809	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv1049658	chr11:85885461-85898809	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85879000-85885600	Weak transcription	Psoas Muscle	Psoas
2	chr11:85882600-85887000	Enhancers	Fetal Muscle Leg	muscle
3	chr11:85882600-85887800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:85882600-85890800	Enhancers	Placenta	Placenta
5	chr11:85882600-85891600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr11:85882800-85886400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:85883200-85885800	Enhancers	Brain Hippocampus Middle	brain
8	chr11:85883200-85888000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:85883200-85891400	Weak transcription	Thymus	Thymus
10	chr11:85883400-85887200	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr11:85883400-85888200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:85883400-85888800	Enhancers	HMEC	breast
13	chr11:85883600-85885600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr11:85883600-85885600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:85883600-85885800	Enhancers	Primary hematopoietic stem cells	blood
16	chr11:85883600-85888000	Enhancers	HUVEC	blood vessel
17	chr11:85883600-85888800	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr11:85883600-85889000	Enhancers	Osteobl	bone
19	chr11:85883800-85885600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:85883800-85885600	Enhancers	Adipose Nuclei	Adipose
21	chr11:85883800-85885600	Enhancers	HSMM	muscle
22	chr11:85883800-85885600	Enhancers	NH-A	brain
23	chr11:85883800-85885800	Enhancers	Brain Angular Gyrus	brain
24	chr11:85883800-85886000	Enhancers	Brain Cingulate Gyrus	brain
25	chr11:85883800-85886000	Enhancers	Brain Substantia Nigra	brain
26	chr11:85883800-85886000	Enhancers	Fetal Thymus	thymus
27	chr11:85883800-85886200	Enhancers	Duodenum Mucosa	Duodenum
28	chr11:85883800-85886400	Enhancers	Fetal Intestine Small	intestine
29	chr11:85883800-85886600	Enhancers	Fetal Intestine Large	intestine
30	chr11:85883800-85886800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr11:85883800-85887000	Enhancers	NHDF-Ad	bronchial
32	chr11:85883800-85887000	Enhancers	NHLF	lung
33	chr11:85883800-85887800	Enhancers	HSMMtube	muscle
34	chr11:85883800-85890400	Enhancers	Placenta Amnion	Placenta Amnion
35	chr11:85883800-85890800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr11:85884000-85885800	Enhancers	A549	lung
37	chr11:85884000-85886000	Enhancers	Fetal Lung	lung
38	chr11:85884000-85886200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:85884000-85886200	Enhancers	Brain Anterior Caudate	brain
40	chr11:85884000-85886200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr11:85884000-85887000	Enhancers	Right Atrium	heart
42	chr11:85884200-85886000	Enhancers	Fetal Stomach	stomach
43	chr11:85884200-85886200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr11:85884400-85887400	Weak transcription	GM12878-XiMat	blood
45	chr11:85884600-85886000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
46	chr11:85884600-85887000	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr11:85884600-85888200	Enhancers	Liver	Liver
48	chr11:85884800-85885600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr11:85884800-85885600	Enhancers	HepG2	liver
50	chr11:85884800-85886000	Enhancers	Colon Smooth Muscle	Colon

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