Variant report

Variant	rs6592276
Chromosome Location	chr11:85898178-85898179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10751135	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10792836	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7118445	0.91[ASN][1000 genomes]
rs7930421	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9666271	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:33 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	esv2757460	chr11:85869944-85905513	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759846	chr11:85869944-85905513	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1040400	chr11:85883303-85898809	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1043422	chr11:85883840-85898809	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv1049658	chr11:85885461-85898809	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv1049881	chr11:85885684-85898809	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	nsv555645	chr11:85886994-85898770	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	esv2760233	chr11:85887957-85899812	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
12	nsv8851	chr11:85888397-85899580	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
13	esv999880	chr11:85888638-85902307	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
14	esv3471552	chr11:85888769-85899564	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
15	esv3471563	chr11:85888947-85899377	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
16	esv999639	chr11:85889185-85898814	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
17	esv992965	chr11:85889435-85899023	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
18	nsv514637	chr11:85889632-85898584	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
19	esv988186	chr11:85889658-85898821	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
20	esv2421379	chr11:85889658-85898821	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
21	nsv442624	chr11:85889658-85898821	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
22	nsv555649	chr11:85890389-85898178	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
23	nsv555650	chr11:85890389-85898770	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
24	nsv555651	chr11:85890389-85900117	Flanking Active TSS Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
25	nsv555653	chr11:85891148-85898178	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
26	nsv555654	chr11:85891148-85898770	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
27	nsv555657	chr11:85891661-85898178	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
28	nsv555658	chr11:85891661-85898770	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
29	nsv555659	chr11:85891661-85900117	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
30	nsv555660	chr11:85891661-85905715	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
31	nsv555662	chr11:85892483-85898770	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
32	nsv555663	chr11:85893051-85898178	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
33	nsv555664	chr11:85893051-85898770	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85886000-85903000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:85894400-85904600	Weak transcription	Pancreas	Pancrea
3	chr11:85894800-85902800	Weak transcription	Primary B cells from cord blood	blood
4	chr11:85895000-85898400	Enhancers	K562	blood
5	chr11:85895000-85903200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:85895000-85903600	Weak transcription	Right Ventricle	heart
7	chr11:85895000-85904000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:85895000-85904000	Weak transcription	Fetal Thymus	thymus
9	chr11:85895200-85903400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:85895400-85898600	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr11:85895800-85898400	Enhancers	Left Ventricle	heart
12	chr11:85896000-85902200	Weak transcription	Brain Hippocampus Middle	brain
13	chr11:85896200-85899600	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr11:85896200-85899800	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr11:85897200-85898400	Enhancers	Right Atrium	heart
16	chr11:85897600-85898800	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr11:85897600-85902200	Weak transcription	Hela-S3	cervix
18	chr11:85897800-85898400	Enhancers	Adipose Nuclei	Adipose
19	chr11:85897800-85902400	Weak transcription	Psoas Muscle	Psoas
20	chr11:85897800-85904000	Weak transcription	Brain Angular Gyrus	brain
21	chr11:85897800-85904000	Weak transcription	Fetal Muscle Leg	muscle
22	chr11:85898000-85898200	Enhancers	Brain Anterior Caudate	brain
23	chr11:85898000-85898400	Enhancers	Skeletal Muscle Female	skeletal muscle

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