Variant report

Variant	rs10751168
Chromosome Location	chr11:87314008-87314009
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:87313979-87314088	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
RNU6-1135P	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10751169	0.92[CEU][hapmap]
rs10792969	0.81[AMR][1000 genomes]
rs10898738	0.84[AMR][1000 genomes]
rs10898749	0.82[AMR][1000 genomes]
rs10898751	0.88[AMR][1000 genomes]
rs11235209	0.83[EUR][1000 genomes]
rs11235223	0.87[AMR][1000 genomes]
rs11235238	0.82[AMR][1000 genomes]
rs1201596	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12288923	0.84[AMR][1000 genomes]
rs12295687	0.82[AMR][1000 genomes]
rs1320391	0.87[AMR][1000 genomes]
rs2000797	0.87[AMR][1000 genomes]
rs2097040	1.00[CEU][hapmap]
rs2156452	0.84[AMR][1000 genomes]
rs2226840	0.84[AMR][1000 genomes]
rs4084199	0.81[AMR][1000 genomes]
rs4463863	0.84[AMR][1000 genomes]
rs4944746	0.88[AMR][1000 genomes]
rs6592396	0.91[CEU][hapmap]
rs7127893	0.88[AMR][1000 genomes]
rs7928908	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv555714	chr11:87058981-87399218	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1039172	chr11:87068731-87385458	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv832224	chr11:87162121-87355923	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv898075	chr11:87278074-87375119	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
7	esv2760195	chr11:87295119-87329156	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
8	nsv555715	chr11:87307553-87349407	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:87313600-87314200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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