Variant report

Variant	rs2000797
Chromosome Location	chr11:87346836-87346837
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10751168	1.00[CEU][hapmap];0.87[AMR][1000 genomes]
rs10751169	0.92[CEU][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs10751171	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10751173	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10751174	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10792969	0.88[EUR][1000 genomes]
rs10792972	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10898726	0.85[EUR][1000 genomes]
rs10898738	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10898749	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10898750	0.87[ASN][1000 genomes]
rs10898751	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10898752	0.87[AMR][1000 genomes]
rs10898758	0.93[ASN][1000 genomes]
rs11235219	0.87[EUR][1000 genomes]
rs11235223	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11235234	0.84[ASN][1000 genomes]
rs11235238	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11235239	0.84[ASN][1000 genomes]
rs11235240	0.85[ASN][1000 genomes]
rs1194866	0.85[ASN][1000 genomes]
rs1194876	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs1201596	0.81[AMR][1000 genomes]
rs12288923	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12295687	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12806398	0.83[ASN][1000 genomes]
rs12806906	0.81[ASN][1000 genomes]
rs12807875	0.84[ASN][1000 genomes]
rs1320391	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2097037	0.80[EUR][1000 genomes]
rs2097039	0.92[EUR][1000 genomes]
rs2097040	1.00[CEU][hapmap];0.83[YRI][hapmap];0.92[EUR][1000 genomes]
rs2156452	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2187329	0.87[EUR][1000 genomes]
rs2212951	0.92[EUR][1000 genomes]
rs2226840	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2226842	0.95[JPT][hapmap]
rs34815829	0.83[ASN][1000 genomes]
rs35632205	0.83[ASN][1000 genomes]
rs4084199	0.86[EUR][1000 genomes]
rs4334041	0.81[ASN][1000 genomes]
rs4463863	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4533056	0.93[ASN][1000 genomes]
rs4641509	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4944745	0.95[AFR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4944746	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6592396	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs7127034	0.80[EUR][1000 genomes]
rs7127893	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7924703	0.85[EUR][1000 genomes]
rs7935995	0.88[ASN][1000 genomes]
rs7948614	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv555714	chr11:87058981-87399218	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1039172	chr11:87068731-87385458	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv832224	chr11:87162121-87355923	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv898075	chr11:87278074-87375119	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
7	nsv555715	chr11:87307553-87349407	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:87345800-87350400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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