Variant report

Variant	rs1194876
Chromosome Location	chr11:87361488-87361489
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10751169	0.85[JPT][hapmap]
rs10751173	0.82[ASN][1000 genomes]
rs10751174	0.82[ASN][1000 genomes]
rs10898749	0.81[ASN][1000 genomes]
rs10898750	0.83[ASN][1000 genomes]
rs10898758	0.85[ASN][1000 genomes]
rs11235238	0.81[ASN][1000 genomes]
rs11235240	0.81[ASN][1000 genomes]
rs1194866	0.81[ASN][1000 genomes]
rs2000797	0.81[ASN][1000 genomes]
rs2226842	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs4533056	0.84[ASN][1000 genomes]
rs4641509	0.82[ASN][1000 genomes]
rs4944731	0.80[AMR][1000 genomes]
rs4944746	0.82[ASN][1000 genomes]
rs6592396	0.93[JPT][hapmap]
rs7935995	0.83[ASN][1000 genomes]
rs7948614	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv555714	chr11:87058981-87399218	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1039172	chr11:87068731-87385458	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv898075	chr11:87278074-87375119	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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