Variant report

Variant	rs10898726
Chromosome Location	chr11:87232678-87232679
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10751167	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10792969	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10898738	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10898749	0.83[EUR][1000 genomes]
rs10898751	0.86[EUR][1000 genomes]
rs11235219	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11235223	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11235238	0.83[EUR][1000 genomes]
rs1320391	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2000797	0.85[EUR][1000 genomes]
rs2097037	0.82[EUR][1000 genomes]
rs2097039	0.93[EUR][1000 genomes]
rs2097040	0.93[EUR][1000 genomes]
rs2156452	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2187329	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2212951	0.93[EUR][1000 genomes]
rs2226840	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2375043	0.80[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3892758	0.83[EUR][1000 genomes]
rs4084199	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4463863	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4517548	0.84[ASN][1000 genomes]
rs4944746	0.86[EUR][1000 genomes]
rs7127034	0.82[EUR][1000 genomes]
rs7127893	0.87[EUR][1000 genomes]
rs7924703	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv555714	chr11:87058981-87399218	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1039172	chr11:87068731-87385458	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv832224	chr11:87162121-87355923	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3347109	chr11:87163383-87245753	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3357299	chr11:87163584-87245523	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv423	chr11:87207723-87252615	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:87230200-87233400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr11:87230400-87232800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr11:87232600-87233600	Enhancers	Rectal Mucosa Donor 31	rectum

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