Variant report

Variant	rs10752614
Chromosome Location	chr1:155995809-155995810
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:155995520..155996339-chr1:156035357..156036791,6	K562	blood:
2	chr1:155987340..155997180-chr1:156020881..156026682,16	K562	blood:
3	chr1:155989952..155992732-chr1:155994341..155996999,4	K562	blood:
4	chr1:155995798..155996307-chr1:156022802..156023761,2	K562	blood:
5	chr1:155995355..155996389-chr1:156035869..156036815,5	MCF-7	breast:
6	chr1:155995748..155997577-chr1:156018249..156020875,2	K562	blood:
7	chr1:155995494..155996398-chr1:156035825..156036616,3	MCF-7	breast:
8	chr1:155995477..155996274-chr1:156099855..156100614,2	MCF-7	breast:
9	chr1:155989710..155992732-chr1:155994151..155995947,4	K562	blood:
10	chr1:155995784..155996355-chr1:156033269..156033791,2	MCF-7	breast:
11	chr1:155994718..155996302-chr1:156009126..156010718,2	MCF-7	breast:
12	chr1:155994840..155997180-chr1:156020881..156023261,2	K562	blood:
13	chr1:155994276..155996728-chr1:156001634..156004616,2	MCF-7	breast:
14	chr1:155988173..156003032-chr1:156020965..156026206,23	MCF-7	breast:
15	chr1:155994337..155996997-chr1:156001255..156005019,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000116586	Chromatin interaction
ENSG00000160803	Chromatin interaction
ENSG00000163479	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10158536	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10796957	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10908487	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12080245	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12138913	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12722806	0.87[ASW][hapmap]
rs1804478	1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1889531	0.87[ASW][hapmap]
rs4661096	1.00[GIH][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916198	chr1:155804210-156403997	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	428 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155990800-156006000	Weak transcription	Spleen	Spleen
2	chr1:155990800-156006800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:155991000-156002600	Weak transcription	NHLF	lung
4	chr1:155991000-156005800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr1:155991000-156011600	Weak transcription	Colonic Mucosa	Colon
6	chr1:155991200-156002800	Weak transcription	NH-A	brain
7	chr1:155991200-156005600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:155991200-156005600	Weak transcription	Brain Angular Gyrus	brain
9	chr1:155991200-156005800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr1:155991200-156005800	Weak transcription	Liver	Liver
11	chr1:155991200-156005800	Weak transcription	Brain Anterior Caudate	brain
12	chr1:155991200-156005800	Weak transcription	Fetal Thymus	thymus
13	chr1:155991200-156006000	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr1:155991200-156006000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr1:155991200-156006600	Weak transcription	Brain Hippocampus Middle	brain
16	chr1:155991200-156006600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr1:155991200-156010800	Weak transcription	Fetal Heart	heart
18	chr1:155991200-156020000	Weak transcription	GM12878-XiMat	blood
19	chr1:155992200-156005800	Weak transcription	Dnd41	blood
20	chr1:155994200-155996200	Enhancers	Fetal Intestine Large	intestine
21	chr1:155994800-156005800	Weak transcription	Brain Germinal Matrix	brain
22	chr1:155995000-155996000	Enhancers	Duodenum Mucosa	Duodenum
23	chr1:155995600-155996000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
24	chr1:155995600-155996000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr1:155995600-155996000	Weak transcription	Fetal Intestine Small	intestine
26	chr1:155995600-155996200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr1:155995600-155996200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr1:155995600-155996200	Enhancers	Placenta	Placenta
29	chr1:155995600-155996200	Enhancers	Stomach Mucosa	stomach
30	chr1:155995600-155996200	Flanking Active TSS	K562	blood
31	chr1:155995800-155996000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr1:155995800-155996000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr1:155995800-155996000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr1:155995800-155996000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr1:155995800-155996000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr1:155995800-155996000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr1:155995800-155996000	Enhancers	Fetal Lung	lung
38	chr1:155995800-155996000	Enhancers	Fetal Muscle Trunk	muscle
39	chr1:155995800-155996000	Flanking Active TSS	HepG2	liver
40	chr1:155995800-155996000	Enhancers	NHDF-Ad	bronchial
41	chr1:155995800-155996200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr1:155995800-155996200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr1:155995800-155996200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr1:155995800-155996200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr1:155995800-155996200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr1:155995800-155996200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr1:155995800-155996200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr1:155995800-155996200	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr1:155995800-155996200	Enhancers	Adipose Nuclei	Adipose
50	chr1:155995800-155996200	Enhancers	Lung	lung

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