Variant report

Variant	rs10908487
Chromosome Location	chr1:155982748-155982749
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:155982679..155985516-chr1:156024059..156026119,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000116586	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10158536	0.84[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10752614	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10796957	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12080245	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12138913	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1804478	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916198	chr1:155804210-156403997	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	428 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155973800-155989400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr1:155976000-155989600	Strong transcription	Fetal Stomach	stomach
3	chr1:155976200-155988800	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr1:155976600-155985000	Strong transcription	Lung	lung
5	chr1:155976600-155985400	Strong transcription	Thymus	Thymus
6	chr1:155976600-155988400	Strong transcription	Liver	Liver
7	chr1:155976600-155988400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr1:155976600-155988600	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr1:155976600-155988800	Strong transcription	Fetal Intestine Small	intestine
10	chr1:155976600-155989200	Strong transcription	Fetal Intestine Large	intestine
11	chr1:155976600-155989400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr1:155976800-155985000	Strong transcription	Fetal Brain Female	brain
13	chr1:155976800-155985400	Strong transcription	Sigmoid Colon	Sigmoid Colon
14	chr1:155976800-155989400	Strong transcription	Fetal Thymus	thymus
15	chr1:155976800-155989600	Strong transcription	Fetal Muscle Leg	muscle
16	chr1:155977200-155983400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr1:155977200-155987000	Weak transcription	Fetal Heart	heart
18	chr1:155977200-155989200	Strong transcription	Fetal Muscle Trunk	muscle
19	chr1:155978000-155983800	Strong transcription	Rectal Mucosa Donor 31	rectum
20	chr1:155978200-155983400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr1:155978200-155983400	Strong transcription	Duodenum Mucosa	Duodenum
22	chr1:155978200-155985000	Strong transcription	H9 Cell Line	embryonic stem cell
23	chr1:155978200-155985000	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr1:155978200-155985000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr1:155978200-155985000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
26	chr1:155978200-155985000	Strong transcription	Brain Substantia Nigra	brain
27	chr1:155978200-155985000	Strong transcription	Duodenum Smooth Muscle	Duodenum
28	chr1:155978200-155985200	Strong transcription	Aorta	Aorta
29	chr1:155978200-155985400	Strong transcription	Adipose Nuclei	Adipose
30	chr1:155978200-155985400	Strong transcription	NHLF	lung
31	chr1:155978200-155986000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr1:155978200-155987000	Strong transcription	Brain Inferior Temporal Lobe	brain
33	chr1:155978200-155988200	Strong transcription	Colon Smooth Muscle	Colon
34	chr1:155978200-155988200	Strong transcription	Left Ventricle	heart
35	chr1:155978200-155988600	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr1:155978200-155989000	Strong transcription	Cortex derived primary cultured neurospheres	brain
37	chr1:155978200-155989200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr1:155978200-155989200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr1:155978200-155989200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr1:155978200-155989200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr1:155978200-155989600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr1:155978200-155989600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr1:155978200-155989600	Strong transcription	Placenta	Placenta
44	chr1:155978400-155985000	Strong transcription	ES-I3 Cell Line	embryonic stem cell
45	chr1:155978400-155985000	Strong transcription	K562	blood
46	chr1:155978400-155985200	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr1:155978400-155985200	Strong transcription	Brain Hippocampus Middle	brain
48	chr1:155978400-155985200	Strong transcription	Right Ventricle	heart
49	chr1:155978400-155985400	Strong transcription	Primary B cells from cord blood	blood
50	chr1:155978400-155985400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links