Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10911004	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12029864	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12075807	0.83[JPT][hapmap]
rs12091015	0.83[JPT][hapmap]
rs12760234	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1555381	0.96[CEU][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs2104037	0.85[CEU][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs2761183	0.93[ASN][1000 genomes]
rs2819525	0.89[EUR][1000 genomes]
rs2819526	0.85[EUR][1000 genomes]
rs2819527	0.96[CEU][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs2819530	0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs35665317	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4075021	1.00[CEU][hapmap];0.86[CHB][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4244192	0.93[CHB][hapmap];0.87[ASN][1000 genomes]
rs495590	0.93[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs6670207	0.84[EUR][1000 genomes]
rs6671218	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6676154	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6693520	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532342	chr1:171922237-172133785	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172040600-172076600	Weak transcription	Brain Angular Gyrus	brain
2	chr1:172046600-172076800	Weak transcription	Fetal Brain Female	brain
3	chr1:172048000-172083800	Weak transcription	Aorta	Aorta
4	chr1:172049400-172110800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr1:172052400-172091600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:172057800-172074000	Weak transcription	Fetal Lung	lung
7	chr1:172062400-172074000	Weak transcription	Fetal Kidney	kidney
8	chr1:172062400-172109200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr1:172069200-172076400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr1:172069200-172102000	Weak transcription	Brain Hippocampus Middle	brain

Quick Search: