Variant report
| Variant | rs2104037 |
|---|---|
| Chromosome Location | chr1:171986487-171986488 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:171984516..171987381-chr1:172008713..172010254,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10752864 | 0.85[CEU][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes] |
| rs10797689 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10911004 | 0.86[EUR][1000 genomes] |
| rs12029864 | 0.86[EUR][1000 genomes] |
| rs12075807 | 0.83[JPT][hapmap] |
| rs12091015 | 0.83[JPT][hapmap] |
| rs12760234 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs1555381 | 0.88[CEU][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2819525 | 0.94[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2819526 | 0.96[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2819527 | 0.88[CEU][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs35665317 | 0.86[EUR][1000 genomes] |
| rs4075021 | 0.84[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs495590 | 1.00[YRI][hapmap] |
| rs6670207 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs6671218 | 0.81[EUR][1000 genomes] |
| rs6676154 | 0.82[EUR][1000 genomes] |
| rs9425847 | 0.90[AMR][1000 genomes];0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3512995 | chr1:171329123-171994470 | Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 56 gene(s) | inside rSNPs | diseases |
| 2 | esv3512997 | chr1:171329123-171994470 | Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 56 gene(s) | inside rSNPs | diseases |
| 3 | nsv532342 | chr1:171922237-172133785 | Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 62 gene(s) | inside rSNPs | diseases |
| 4 | esv2615149 | chr1:171985964-171987471 | Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:171980800-171993600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
