Variant report

Variant	rs9425847
Chromosome Location	chr1:172005153-172005154
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10797689	0.86[AMR][1000 genomes]
rs10911004	0.82[EUR][1000 genomes]
rs12029864	0.82[EUR][1000 genomes]
rs12760234	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1555381	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2104037	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2819525	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2819526	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2819527	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35665317	0.82[EUR][1000 genomes]
rs6670207	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532342	chr1:171922237-172133785	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
2	nsv3532	chr1:171997451-172042351	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171994000-172020400	Weak transcription	Left Ventricle	heart
2	chr1:171994200-172009000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:171999000-172006800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr1:171999600-172006800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr1:172000000-172012800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:172000400-172006800	Weak transcription	Brain Hippocampus Middle	brain
7	chr1:172000400-172009800	Weak transcription	Brain Angular Gyrus	brain
8	chr1:172000600-172007000	Weak transcription	Psoas Muscle	Psoas
9	chr1:172000600-172013600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr1:172000800-172011400	Weak transcription	Right Ventricle	heart
11	chr1:172000800-172013800	Weak transcription	Fetal Brain Female	brain
12	chr1:172001000-172006800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:172001400-172019000	Weak transcription	Fetal Brain Male	brain
14	chr1:172001600-172006800	Weak transcription	Brain Substantia Nigra	brain
15	chr1:172002200-172011600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr1:172002800-172013200	Weak transcription	Primary T cells from cord blood	blood
17	chr1:172003000-172012400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr1:172003200-172006800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr1:172003200-172008200	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr1:172003200-172009800	Weak transcription	Brain Anterior Caudate	brain
21	chr1:172004000-172014000	Weak transcription	Lung	lung
22	chr1:172004200-172008800	Weak transcription	NHEK	skin

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