Variant report

Variant	rs10752936
Chromosome Location	chr1:184336986-184336987
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10494580	0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10737252	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10752937	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10797960	0.93[EUR][1000 genomes]
rs10797961	0.93[EUR][1000 genomes]
rs10911589	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10911590	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10911591	0.95[CHB][hapmap];0.90[ASN][1000 genomes]
rs10911592	0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10911594	0.95[CHB][hapmap]
rs12029316	0.88[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12070787	0.83[EUR][1000 genomes]
rs16823101	0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs4326589	0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs4384189	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4478778	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4512607	0.88[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4631655	0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs4991700	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4991703	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6424950	0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs6659035	0.95[EUR][1000 genomes]
rs6660217	0.95[CHB][hapmap]
rs6678278	0.89[CHB][hapmap]
rs6692317	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6696270	0.95[CHB][hapmap]
rs732959	0.95[CHB][hapmap]
rs7367466	0.80[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7415961	0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs7542578	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv3821	chr1:184319543-184365236	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184336000-184337600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr1:184336200-184337600	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr1:184336400-184337200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:184336400-184337200	Enhancers	Colon Smooth Muscle	Colon
5	chr1:184336800-184337400	Enhancers	Psoas Muscle	Psoas
6	chr1:184336800-184337600	Enhancers	Skeletal Muscle Male	skeletal muscle

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