Variant report

Variant	rs6659035
Chromosome Location	chr1:184336566-184336567
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:184329867..184332976-chr1:184334432..184336630,3	K562	blood:
2	chr1:184335369..184336899-chr1:184344519..184346817,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10158710	0.93[CHB][hapmap]
rs10489721	0.93[CHB][hapmap]
rs10489722	0.93[CHB][hapmap]
rs10494580	0.93[EUR][1000 genomes]
rs10737252	0.98[EUR][1000 genomes]
rs10752935	1.00[CHB][hapmap];0.96[CHD][hapmap];0.80[MEX][hapmap];0.88[ASN][1000 genomes]
rs10752936	0.95[EUR][1000 genomes]
rs10752937	0.95[EUR][1000 genomes]
rs10797960	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10797961	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10797963	0.85[ASN][1000 genomes]
rs10797966	0.93[CHB][hapmap];0.82[GIH][hapmap]
rs10911588	0.87[ASN][1000 genomes]
rs10911589	0.93[EUR][1000 genomes]
rs10911590	0.95[EUR][1000 genomes]
rs10911592	0.95[EUR][1000 genomes]
rs10911593	1.00[CHB][hapmap];0.96[CHD][hapmap];0.85[ASN][1000 genomes]
rs11805001	0.93[CHB][hapmap]
rs11810399	0.93[CHB][hapmap]
rs12029316	0.87[CEU][hapmap];0.95[EUR][1000 genomes]
rs12048492	1.00[CHB][hapmap];0.92[CHD][hapmap];0.86[ASN][1000 genomes]
rs12058294	0.93[CHB][hapmap]
rs12070787	0.80[EUR][1000 genomes]
rs12093839	0.93[CHB][hapmap];0.84[CHD][hapmap];0.91[GIH][hapmap]
rs1535135	0.93[CHB][hapmap]
rs16823097	0.85[ASN][1000 genomes]
rs16823149	0.93[CHB][hapmap];0.84[CHD][hapmap]
rs3924652	0.87[ASN][1000 genomes]
rs4233119	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs4382681	0.87[ASN][1000 genomes]
rs4384189	0.95[EUR][1000 genomes]
rs4391631	0.87[ASN][1000 genomes]
rs4397626	0.87[ASN][1000 genomes]
rs4478778	0.93[EUR][1000 genomes]
rs4512607	0.87[CEU][hapmap];0.95[EUR][1000 genomes]
rs4518858	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs4991700	0.95[EUR][1000 genomes]
rs4991703	0.92[EUR][1000 genomes]
rs61823500	0.85[ASN][1000 genomes]
rs6424948	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs6424949	1.00[CHB][hapmap];0.92[CHD][hapmap];0.86[ASN][1000 genomes]
rs6655949	0.87[ASN][1000 genomes]
rs6666696	0.93[CHB][hapmap];0.82[GIH][hapmap]
rs6670803	0.88[ASN][1000 genomes]
rs6683726	0.87[ASN][1000 genomes]
rs6692317	0.97[EUR][1000 genomes]
rs6696161	1.00[CHB][hapmap];0.84[CHD][hapmap]
rs7367466	0.80[CEU][hapmap];0.97[TSI][hapmap];0.95[EUR][1000 genomes]
rs7512260	0.86[ASN][1000 genomes]
rs7518756	0.87[ASN][1000 genomes]
rs7522628	0.93[CHB][hapmap]
rs7542578	0.81[EUR][1000 genomes]
rs7542925	0.87[ASN][1000 genomes]
rs7545368	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv3821	chr1:184319543-184365236	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184333800-184336800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr1:184335800-184336800	Enhancers	Osteobl	bone
3	chr1:184336000-184336600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:184336000-184337600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:184336200-184337600	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr1:184336400-184336600	Enhancers	Rectal Mucosa Donor 29	rectum
7	chr1:184336400-184336800	Weak transcription	Psoas Muscle	Psoas
8	chr1:184336400-184337200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:184336400-184337200	Enhancers	Colon Smooth Muscle	Colon

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