Variant report

Variant	rs10753681
Chromosome Location	chr1:165482762-165482763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10753680	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1913841	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs367199	0.81[CEU][hapmap];0.86[CHB][hapmap];0.94[CHD][hapmap];0.85[JPT][hapmap];0.81[MEX][hapmap]
rs4657451	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs10753681	CASQ1	cis	cerebellum	SCAN
rs10753681	MGST3	Cis_1M	lymphoblastoid	RTeQTL
rs10753681	MGST3	cis	parietal	SCAN
rs10753681	ILDR2	cis	parietal	SCAN
rs10753681	KCNJ9	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165467600-165483200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:165481000-165483200	Weak transcription	Fetal Heart	heart
3	chr1:165482400-165487400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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