Variant report

Variant	rs1913841
Chromosome Location	chr1:165500059-165500060
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10753680	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10753681	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10753683	0.85[EUR][1000 genomes]
rs10918216	0.84[EUR][1000 genomes]
rs10918218	0.82[EUR][1000 genomes]
rs1572541	0.84[EUR][1000 genomes]
rs2766081	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs367199	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs369598	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs453717	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4657451	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3434870	chr1:165497978-165500276	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1913841	MGST3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165497000-165501400	Weak transcription	Left Ventricle	heart
2	chr1:165497200-165501400	Weak transcription	Right Ventricle	heart
3	chr1:165499200-165501800	Enhancers	Fetal Heart	heart
4	chr1:165499400-165502800	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr1:165499400-165504200	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr1:165499600-165500400	Weak transcription	Right Atrium	heart
7	chr1:165499800-165500800	Weak transcription	Psoas Muscle	Psoas
8	chr1:165500000-165500400	Enhancers	Fetal Lung	lung
9	chr1:165500000-165501000	Enhancers	Liver	Liver
10	chr1:165500000-165503000	Enhancers	Fetal Muscle Leg	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links