Variant report

Variant	rs369598
Chromosome Location	chr1:165531667-165531668
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10753683	0.95[EUR][1000 genomes]
rs10918216	0.93[EUR][1000 genomes]
rs10918218	0.95[CEU][hapmap];0.91[EUR][1000 genomes]
rs1572541	0.95[CEU][hapmap];0.87[TSI][hapmap];0.93[EUR][1000 genomes]
rs1913841	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2766081	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs367199	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs453717	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs722260	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429902	chr1:165531342-165574342	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs369598	MGST3	cis	multi-tissue	Pritchard

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165530800-165533600	Weak transcription	Left Ventricle	heart
2	chr1:165530800-165533800	Weak transcription	Right Atrium	heart
3	chr1:165531000-165534200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:165531200-165534000	Weak transcription	Right Ventricle	heart
5	chr1:165531400-165533800	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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