Variant report

Variant	rs1075371
Chromosome Location	chr9:117444370-117444371
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:117443479..117444428-chr9:117776016..117776531,2	K562	blood:
2	chr9:117425968..117429123-chr9:117442170..117445645,3	K562	blood:
3	chr9:117442900..117446108-chr9:117775232..117777695,3	MCF-7	breast:
4	chr9:117443662..117444548-chr9:117673210..117673712,2	MCF-7	breast:
5	chr9:117444057..117444936-chr9:117676554..117677068,2	MCF-7	breast:
6	chr9:117443571..117445056-chr9:117668906..117670084,6	MCF-7	breast:
7	chr9:117442886..117445805-chr9:117668669..117671116,2	MCF-7	breast:
8	chr9:117167819..117168490-chr9:117443531..117444436,2	MCF-7	breast:
9	chr9:117443696..117445012-chr9:117500814..117501800,6	MCF-7	breast:
10	chr9:117443095..117445141-chr9:117775959..117778088,21	MCF-7	breast:
11	chr9:117443932..117444479-chr9:118286459..118287036,2	MCF-7	breast:
12	chr9:117443499..117444975-chr9:117775722..117777924,20	MCF-7	breast:
13	chr9:117443850..117445001-chr9:117673133..117675031,14	MCF-7	breast:
14	chr9:117443694..117445024-chr9:117500823..117502057,7	MCF-7	breast:
15	chr9:117443784..117445753-chr9:117667939..117670651,2	MCF-7	breast:
16	chr9:117167828..117168592-chr9:117444042..117444573,3	K562	blood:

No data

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10513256	0.97[ASN][1000 genomes]
rs10982362	0.87[EUR][1000 genomes]
rs12005359	0.85[ASN][1000 genomes]
rs12555235	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12683400	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12684218	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12685463	0.85[ASN][1000 genomes]
rs12686294	0.80[EUR][1000 genomes]
rs16930792	0.94[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16930798	0.94[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16930991	0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2031876	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2274598	1.00[GIH][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs2282002	0.80[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4978604	0.83[CHB][hapmap];0.85[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56765969	0.83[EUR][1000 genomes]
rs57814945	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58007505	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59422754	0.87[EUR][1000 genomes]
rs59727257	0.82[ASN][1000 genomes]
rs60387901	0.87[EUR][1000 genomes]
rs60862773	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61102550	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7857127	0.87[EUR][1000 genomes]
rs7866902	1.00[GIH][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs7875692	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9775036	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048093	chr9:116945025-117456210	Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
2	nsv1046311	chr9:116953739-117447142	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
3	nsv1052877	chr9:116953739-117456210	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
4	nsv1039681	chr9:116953739-117457158	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
5	nsv1051987	chr9:116955841-117453668	Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
6	nsv1044374	chr9:116955841-117460150	Genic enhancers Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
7	nsv466534	chr9:116956268-117455810	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
8	nsv615234	chr9:116956268-117455810	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
9	nsv1048817	chr9:116957958-117456210	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
10	nsv615236	chr9:116958144-117455810	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
11	nsv466535	chr9:116958144-117456175	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
12	nsv615237	chr9:116958144-117456175	Strong transcription Active TSS Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
13	nsv615238	chr9:116958144-117458475	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
14	nsv430094	chr9:116958446-117456446	Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
15	nsv831694	chr9:117328640-117502785	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
16	nsv893766	chr9:117385992-117516418	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
17	nsv1042718	chr9:117435306-117488969	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117440200-117445000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr9:117441600-117448200	Weak transcription	NHLF	lung
3	chr9:117441800-117445000	Weak transcription	HSMM	muscle
4	chr9:117441800-117448600	Weak transcription	HUVEC	blood vessel
5	chr9:117441800-117452600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:117442000-117444400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr9:117443000-117444400	Enhancers	HMEC	breast
8	chr9:117443200-117452600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:117443400-117449200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr9:117443600-117444400	Enhancers	A549	lung
11	chr9:117443800-117444400	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr9:117443800-117444400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr9:117443800-117444600	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr9:117444000-117444400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr9:117444000-117444400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:117444000-117444400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
17	chr9:117444000-117444400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
18	chr9:117444000-117444400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr9:117444000-117444400	Enhancers	Liver	Liver
20	chr9:117444000-117444400	Enhancers	Hela-S3	cervix
21	chr9:117444000-117444400	Enhancers	Osteobl	bone
22	chr9:117444000-117444600	Enhancers	Primary B cells from peripheral blood	blood
23	chr9:117444000-117444600	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr9:117444000-117444600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
25	chr9:117444000-117444600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr9:117444000-117444600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr9:117444000-117444600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr9:117444000-117444600	Enhancers	Pancreas	Pancrea
29	chr9:117444000-117444600	Enhancers	HepG2	liver
30	chr9:117444000-117444600	Enhancers	NHDF-Ad	bronchial
31	chr9:117444000-117444800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr9:117444200-117444400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr9:117444200-117444400	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr9:117444200-117444400	Enhancers	Muscle Satellite Cultured Cells	--
35	chr9:117444200-117444600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr9:117444200-117444800	Enhancers	Primary T cells fromperipheralblood	blood
37	chr9:117444200-117444800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr9:117444200-117445000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr9:117444200-117445200	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links