Variant report

Variant	rs12555235
Chromosome Location	chr9:117478314-117478315
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1075371	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10982362	0.80[EUR][1000 genomes]
rs12683400	0.90[EUR][1000 genomes]
rs12684218	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16930792	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16930991	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2031876	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2274598	0.80[EUR][1000 genomes]
rs2282002	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4978604	0.80[EUR][1000 genomes]
rs57814945	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58007505	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59422754	0.80[EUR][1000 genomes]
rs60387901	0.80[EUR][1000 genomes]
rs60862773	0.83[EUR][1000 genomes]
rs61102550	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7857127	0.80[EUR][1000 genomes]
rs7875692	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9775036	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831694	chr9:117328640-117502785	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv893766	chr9:117385992-117516418	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1042718	chr9:117435306-117488969	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117472000-117480400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:117472600-117478400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr9:117477800-117480800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr9:117477800-117483000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr9:117478000-117478600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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