Variant report

Variant	rs10753711
Chromosome Location	chr1:166152487-166152488
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12026024	0.83[AMR][1000 genomes]
rs12564120	0.83[AMR][1000 genomes]
rs12564121	0.83[AMR][1000 genomes]
rs1376661	0.83[AMR][1000 genomes]
rs1864790	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2116521	0.83[AMR][1000 genomes]
rs4657525	0.83[AMR][1000 genomes]
rs7548354	0.83[AMR][1000 genomes]
rs930721	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	esv3332610	chr1:166111288-166282689	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166143800-166154200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:166147600-166165800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:166151800-166153800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr1:166152000-166153600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:166152000-166154200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr1:166152200-166154600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr1:166152200-166156800	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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