Variant report

Variant	rs12564120
Chromosome Location	chr1:166112899-166112900
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10753711	0.83[AMR][1000 genomes]
rs12132376	0.94[AFR][1000 genomes]
rs12564121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1376661	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1451598	0.80[AMR][1000 genomes]
rs1451599	0.80[AMR][1000 genomes]
rs1864790	0.80[AMR][1000 genomes]
rs2116521	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4408130	0.80[AMR][1000 genomes]
rs4657525	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6699185	0.80[AMR][1000 genomes]
rs7548354	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs930721	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	esv3332610	chr1:166111288-166282689	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166106200-166119000	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr1:166106600-166123200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr1:166109200-166119000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:166109400-166114600	Weak transcription	Spleen	Spleen
5	chr1:166110000-166114400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr1:166111200-166113400	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr1:166111200-166116400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:166112400-166113200	Enhancers	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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