Variant report

Variant	rs4408130
Chromosome Location	chr1:166126119-166126120
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12564120	0.80[AMR][1000 genomes]
rs12564121	0.80[AMR][1000 genomes]
rs1376661	1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs1451598	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1451599	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2116521	0.80[AMR][1000 genomes]
rs4657525	1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6663116	0.83[AFR][1000 genomes]
rs6663205	0.84[YRI][hapmap];0.83[AFR][1000 genomes]
rs6663496	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6699185	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7548354	0.80[AMR][1000 genomes]
rs930721	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	esv3332610	chr1:166111288-166282689	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166119400-166128400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:166122600-166126800	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr1:166122600-166127200	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr1:166123400-166126600	Weak transcription	Psoas Muscle	Psoas
5	chr1:166123600-166127000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr1:166123800-166134000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr1:166125400-166127000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:166125600-166126800	Enhancers	Right Atrium	heart
9	chr1:166126000-166126200	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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