Variant report

Variant	rs10754028
Chromosome Location	chr1:192733529-192733530
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10429900	0.97[EUR][1000 genomes]
rs10737613	0.96[EUR][1000 genomes]
rs10737615	0.99[EUR][1000 genomes]
rs10737616	0.98[EUR][1000 genomes]
rs10754025	0.94[EUR][1000 genomes]
rs10754026	0.97[EUR][1000 genomes]
rs10754027	0.98[EUR][1000 genomes]
rs10754029	0.99[EUR][1000 genomes]
rs10801143	0.97[EUR][1000 genomes]
rs10801144	0.98[EUR][1000 genomes]
rs10801145	0.98[EUR][1000 genomes]
rs10801146	0.98[EUR][1000 genomes]
rs10801147	0.99[EUR][1000 genomes]
rs10921244	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10921248	0.97[EUR][1000 genomes]
rs10921252	0.96[EUR][1000 genomes]
rs10921253	0.98[EUR][1000 genomes]
rs10921254	0.98[EUR][1000 genomes]
rs10921255	0.94[EUR][1000 genomes]
rs10921256	0.98[EUR][1000 genomes]
rs10921257	0.98[EUR][1000 genomes]
rs10921262	0.92[EUR][1000 genomes]
rs10921263	0.92[EUR][1000 genomes]
rs12022694	0.99[EUR][1000 genomes]
rs12027961	0.98[EUR][1000 genomes]
rs12030009	0.99[EUR][1000 genomes]
rs12030545	0.95[EUR][1000 genomes]
rs12058129	0.98[EUR][1000 genomes]
rs12143838	0.98[EUR][1000 genomes]
rs12145127	0.99[EUR][1000 genomes]
rs1231890	0.82[EUR][1000 genomes]
rs12408837	0.97[EUR][1000 genomes]
rs12409129	0.97[EUR][1000 genomes]
rs12409270	0.97[EUR][1000 genomes]
rs12410029	0.97[EUR][1000 genomes]
rs12568780	0.98[EUR][1000 genomes]
rs12724316	0.96[EUR][1000 genomes]
rs12728622	0.92[EUR][1000 genomes]
rs12741484	0.84[EUR][1000 genomes]
rs1418720	0.99[EUR][1000 genomes]
rs1418721	0.98[EUR][1000 genomes]
rs1592232	0.98[EUR][1000 genomes]
rs1592233	0.98[EUR][1000 genomes]
rs1933696	0.98[EUR][1000 genomes]
rs1933701	0.98[EUR][1000 genomes]
rs1933702	0.98[EUR][1000 genomes]
rs1935825	0.98[EUR][1000 genomes]
rs2066410	0.98[EUR][1000 genomes]
rs2146603	0.98[EUR][1000 genomes]
rs2146604	0.98[EUR][1000 genomes]
rs2146606	0.97[EUR][1000 genomes]
rs2369895	0.98[EUR][1000 genomes]
rs2369896	0.98[EUR][1000 genomes]
rs34737391	0.81[EUR][1000 genomes]
rs3767489	0.94[EUR][1000 genomes]
rs4311868	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6428133	0.97[EUR][1000 genomes]
rs6428134	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6657274	0.98[EUR][1000 genomes]
rs720829	0.99[EUR][1000 genomes]
rs7522463	0.94[EUR][1000 genomes]
rs7525732	0.98[EUR][1000 genomes]
rs7534794	0.98[EUR][1000 genomes]
rs7535996	0.96[EUR][1000 genomes]
rs7537443	0.98[EUR][1000 genomes]
rs7538277	0.97[EUR][1000 genomes]
rs7545839	0.97[EUR][1000 genomes]
rs7548448	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv548660	chr1:192609268-192945348	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv997662	chr1:192715815-192740227	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10754028	RGS2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192726000-192735200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:192726400-192736400	Weak transcription	Fetal Lung	lung
3	chr1:192732000-192733800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:192732000-192733800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr1:192732000-192735200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:192732200-192733600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:192732200-192733600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:192732200-192736600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:192732400-192733800	Enhancers	Hela-S3	cervix
10	chr1:192733000-192735200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:192733000-192735200	Active TSS	HSMMtube	muscle
12	chr1:192733000-192735200	Weak transcription	NHEK	skin
13	chr1:192733000-192735200	Weak transcription	NHLF	lung
14	chr1:192733200-192733800	Enhancers	Rectal Smooth Muscle	rectum
15	chr1:192733200-192734800	Weak transcription	Osteobl	bone
16	chr1:192733200-192736400	Weak transcription	Colon Smooth Muscle	Colon

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