Variant report

Variant	rs10921244
Chromosome Location	chr1:192709938-192709939
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10429900	0.83[EUR][1000 genomes]
rs10737613	0.82[EUR][1000 genomes]
rs10737615	0.81[EUR][1000 genomes]
rs10754025	0.82[EUR][1000 genomes]
rs10754026	0.82[EUR][1000 genomes]
rs10754027	0.81[EUR][1000 genomes]
rs10754028	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10754029	0.81[EUR][1000 genomes]
rs10801143	0.82[EUR][1000 genomes]
rs10801144	0.81[EUR][1000 genomes]
rs10801145	0.81[EUR][1000 genomes]
rs10801146	0.81[EUR][1000 genomes]
rs10801147	0.81[EUR][1000 genomes]
rs10801149	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10921248	0.83[EUR][1000 genomes]
rs10921253	0.81[EUR][1000 genomes]
rs10921254	0.81[EUR][1000 genomes]
rs12022694	0.80[EUR][1000 genomes]
rs12027961	0.81[EUR][1000 genomes]
rs12030009	0.80[EUR][1000 genomes]
rs12145127	0.81[EUR][1000 genomes]
rs1231890	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12408837	0.83[EUR][1000 genomes]
rs12409129	0.83[EUR][1000 genomes]
rs12409270	0.82[EUR][1000 genomes]
rs12410029	0.83[EUR][1000 genomes]
rs12724316	0.82[EUR][1000 genomes]
rs12728622	0.83[EUR][1000 genomes]
rs1418720	0.81[EUR][1000 genomes]
rs1592232	0.81[EUR][1000 genomes]
rs1592233	0.81[EUR][1000 genomes]
rs1933701	0.81[EUR][1000 genomes]
rs1933702	0.81[EUR][1000 genomes]
rs2146603	0.81[EUR][1000 genomes]
rs2146604	0.81[EUR][1000 genomes]
rs2146606	0.81[EUR][1000 genomes]
rs2369895	0.81[EUR][1000 genomes]
rs3767489	0.83[EUR][1000 genomes]
rs4311868	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6428133	0.82[EUR][1000 genomes]
rs6428134	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs720829	0.81[EUR][1000 genomes]
rs7522463	0.82[EUR][1000 genomes]
rs7525732	0.81[EUR][1000 genomes]
rs7534794	0.81[EUR][1000 genomes]
rs7535996	0.82[EUR][1000 genomes]
rs7537443	0.81[EUR][1000 genomes]
rs7538277	0.83[EUR][1000 genomes]
rs7545839	0.83[EUR][1000 genomes]
rs7548448	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv548660	chr1:192609268-192945348	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192709800-192710000	ZNF genes & repeats	Fetal Lung	lung

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