Variant report

Variant	rs10754954
Chromosome Location	chr2:9853769-9853770
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10186640	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10929606	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11685771	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12053215	0.89[ASN][1000 genomes]
rs12466375	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12476775	0.85[ASN][1000 genomes]
rs12478373	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13025476	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17592239	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34840654	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35501269	0.93[ASN][1000 genomes]
rs35690179	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35969985	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4605345	0.84[ASN][1000 genomes]
rs4669444	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6715057	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6736234	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9789690	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469405	chr2:9814374-9964947	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv580930	chr2:9814374-9964947	Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:9845400-9860600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:9846800-9854800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:9851400-9855400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:9852800-9853800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr2:9852800-9855400	Weak transcription	Right Atrium	heart
6	chr2:9853000-9853800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr2:9853000-9854200	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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