Variant report

Variant	rs4605345
Chromosome Location	chr2:9855737-9855738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10186640	0.84[ASN][1000 genomes]
rs10754954	0.84[ASN][1000 genomes]
rs10929606	0.84[ASN][1000 genomes]
rs11685771	0.94[CHB][hapmap];0.93[CHD][hapmap];0.83[ASN][1000 genomes]
rs12053215	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12466375	0.84[ASN][1000 genomes]
rs12478373	0.94[CHB][hapmap];0.90[CHD][hapmap];0.86[ASN][1000 genomes]
rs13025476	0.84[ASN][1000 genomes]
rs17592239	0.84[ASN][1000 genomes]
rs34840654	0.83[ASN][1000 genomes]
rs35501269	0.84[ASN][1000 genomes]
rs35690179	0.84[ASN][1000 genomes]
rs35969985	0.84[ASN][1000 genomes]
rs4669444	0.84[ASN][1000 genomes]
rs9789690	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469405	chr2:9814374-9964947	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv580930	chr2:9814374-9964947	Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1003026	chr2:9854939-10012516	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:9845400-9860600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:9854200-9856200	Enhancers	K562	blood
3	chr2:9854600-9855800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr2:9854800-9855800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:9854800-9855800	Enhancers	Fetal Heart	heart
6	chr2:9855200-9856000	Enhancers	HUVEC	blood vessel
7	chr2:9855400-9856400	Enhancers	Lung	lung
8	chr2:9855600-9855800	Weak transcription	Right Atrium	heart
9	chr2:9855600-9856000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr2:9855600-9856000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr2:9855600-9857400	Weak transcription	Fetal Intestine Large	intestine
12	chr2:9855600-9857800	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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