Variant report

Variant	rs10754977
Chromosome Location	chr2:172137079-172137080
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10490605	0.92[ASN][1000 genomes]
rs10803858	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10803859	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10930464	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10930466	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10930468	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11684294	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11695238	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11891021	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11903215	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12474103	0.98[ASN][1000 genomes]
rs13007471	0.98[ASN][1000 genomes]
rs34931272	0.98[ASN][1000 genomes]
rs4584997	0.98[ASN][1000 genomes]
rs6727785	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6743965	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7349362	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs888272	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3382346	chr2:172062677-172363892	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172129000-172138800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr2:172136400-172137200	Enhancers	HepG2	liver
3	chr2:172136800-172138000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr2:172137000-172139000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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