Variant report

Variant	rs888272
Chromosome Location	chr2:172143499-172143500
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10754977	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10803858	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10803859	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10930464	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10930466	0.93[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10930467	0.87[MEX][hapmap]
rs10930468	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11695238	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11891021	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11903215	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4584997	0.85[JPT][hapmap]
rs4668384	0.87[CHB][hapmap]
rs6727785	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6743965	0.85[JPT][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7349362	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3382346	chr2:172062677-172363892	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172138200-172143600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr2:172138400-172143600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:172139000-172143600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:172141200-172145200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:172141800-172145400	Weak transcription	Esophagus	oesophagus
6	chr2:172143400-172144400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:172143400-172144400	Enhancers	HMEC	breast
8	chr2:172143400-172144600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:172143400-172144600	Enhancers	NHEK	skin
10	chr2:172143400-172146600	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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